Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC28AQ8IWP9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCDC28AQ8IWP9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 AL121603.2-201ENST00000557373 2117 ntBASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 DUSP8P4-201ENST00000399538 1761 ntBASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 LINC01003-201ENST00000564834 1764 ntBASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28AQ8IWP9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC28AQ8IWP9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC28AQ8IWP9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28AQ8IWP9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28AQ8IWP9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28AQ8IWP9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28AQ8IWP9 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC28AQ8IWP9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC28AQ8IWP9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28AQ8IWP9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28AQ8IWP9 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28AQ8IWP9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC28AQ8IWP9 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28AQ8IWP9 DYNLL1-208ENST00000550178 581 ntBASIC20.31■□□□□ 0.84
CCDC28AQ8IWP9 AP002365.1-201ENST00000603448 772 ntBASIC20.3■□□□□ 0.84
CCDC28AQ8IWP9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC28AQ8IWP9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC28AQ8IWP9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28AQ8IWP9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28AQ8IWP9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28AQ8IWP9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC28AQ8IWP9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28AQ8IWP9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC28AQ8IWP9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC28AQ8IWP9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CCDC28AQ8IWP9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
CCDC28AQ8IWP9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28AQ8IWP9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC28AQ8IWP9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28AQ8IWP9 C9orf163-202ENST00000624034 2573 ntBASIC20.26■□□□□ 0.83
CCDC28AQ8IWP9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28AQ8IWP9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28AQ8IWP9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28AQ8IWP9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CCDC28AQ8IWP9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28AQ8IWP9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28AQ8IWP9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28AQ8IWP9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28AQ8IWP9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28AQ8IWP9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28AQ8IWP9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28AQ8IWP9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28AQ8IWP9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms