Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.13■■□□□ 1.45
VRK3Q8IV63 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
VRK3Q8IV63 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.13■■□□□ 1.45
VRK3Q8IV63 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
VRK3Q8IV63 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
VRK3Q8IV63 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.12■■□□□ 1.45
VRK3Q8IV63 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VRK3Q8IV63 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VRK3Q8IV63 GPX1-201ENST00000419349 1106 ntBASIC24.11■■□□□ 1.45
VRK3Q8IV63 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VRK3Q8IV63 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VRK3Q8IV63 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VRK3Q8IV63 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VRK3Q8IV63 AC092296.2-201ENST00000589470 999 ntBASIC24.1■■□□□ 1.45
VRK3Q8IV63 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
VRK3Q8IV63 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
VRK3Q8IV63 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
VRK3Q8IV63 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
VRK3Q8IV63 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
VRK3Q8IV63 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
VRK3Q8IV63 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.09■■□□□ 1.45
VRK3Q8IV63 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
VRK3Q8IV63 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
VRK3Q8IV63 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
VRK3Q8IV63 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
VRK3Q8IV63 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
VRK3Q8IV63 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.06■■□□□ 1.44
VRK3Q8IV63 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
VRK3Q8IV63 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VRK3Q8IV63 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VRK3Q8IV63 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.06■■□□□ 1.44
VRK3Q8IV63 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.05■■□□□ 1.44
VRK3Q8IV63 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
VRK3Q8IV63 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VRK3Q8IV63 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VRK3Q8IV63 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
VRK3Q8IV63 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
VRK3Q8IV63 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
VRK3Q8IV63 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.04■■□□□ 1.44
VRK3Q8IV63 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.04■■□□□ 1.44
VRK3Q8IV63 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.04■■□□□ 1.44
VRK3Q8IV63 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
VRK3Q8IV63 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VRK3Q8IV63 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.02■■□□□ 1.44
VRK3Q8IV63 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VRK3Q8IV63 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
VRK3Q8IV63 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.01■■□□□ 1.43
VRK3Q8IV63 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.01■■□□□ 1.43
VRK3Q8IV63 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.01■■□□□ 1.43
VRK3Q8IV63 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VRK3Q8IV63 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24■■□□□ 1.43
VRK3Q8IV63 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24■■□□□ 1.43
VRK3Q8IV63 HSD17B1P1-201ENST00000590052 955 ntBASIC24■■□□□ 1.43
VRK3Q8IV63 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
VRK3Q8IV63 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.99■■□□□ 1.43
VRK3Q8IV63 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
VRK3Q8IV63 ECEL1P2-201ENST00000461596 1295 ntBASIC23.99■■□□□ 1.43
VRK3Q8IV63 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.99■■□□□ 1.43
VRK3Q8IV63 AC025884.2-201ENST00000553429 711 ntBASIC23.99■■□□□ 1.43
VRK3Q8IV63 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.99■■□□□ 1.43
VRK3Q8IV63 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.99■■□□□ 1.43
VRK3Q8IV63 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VRK3Q8IV63 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.98■■□□□ 1.43
VRK3Q8IV63 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VRK3Q8IV63 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VRK3Q8IV63 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.97■■□□□ 1.43
VRK3Q8IV63 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VRK3Q8IV63 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VRK3Q8IV63 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
VRK3Q8IV63 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VRK3Q8IV63 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
VRK3Q8IV63 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VRK3Q8IV63 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.97■■□□□ 1.43
VRK3Q8IV63 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.97■■□□□ 1.43
VRK3Q8IV63 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.97■■□□□ 1.43
VRK3Q8IV63 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VRK3Q8IV63 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VRK3Q8IV63 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VRK3Q8IV63 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.96■■□□□ 1.43
VRK3Q8IV63 SMPD5-203ENST00000639008 1464 ntBASIC23.96■■□□□ 1.43
VRK3Q8IV63 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.96■■□□□ 1.43
VRK3Q8IV63 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
VRK3Q8IV63 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.95■■□□□ 1.42
VRK3Q8IV63 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
VRK3Q8IV63 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.95■■□□□ 1.42
VRK3Q8IV63 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
VRK3Q8IV63 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms