Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.47■■■□□ 2.15
KRT40Q6A162 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
KRT40Q6A162 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.47■■■□□ 2.15
KRT40Q6A162 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
KRT40Q6A162 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
KRT40Q6A162 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.46■■■□□ 2.15
KRT40Q6A162 CREM-210ENST00000374721 2020 ntTSL 5 BASIC28.46■■■□□ 2.15
KRT40Q6A162 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.46■■■□□ 2.15
KRT40Q6A162 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.45■■■□□ 2.15
KRT40Q6A162 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
KRT40Q6A162 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.14
KRT40Q6A162 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.45■■■□□ 2.14
KRT40Q6A162 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
KRT40Q6A162 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.44■■■□□ 2.14
KRT40Q6A162 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
KRT40Q6A162 GPX1-201ENST00000419349 1106 ntBASIC28.44■■■□□ 2.14
KRT40Q6A162 AL359258.2-201ENST00000564063 1566 ntBASIC28.44■■■□□ 2.14
KRT40Q6A162 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.43■■■□□ 2.14
KRT40Q6A162 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.43■■■□□ 2.14
KRT40Q6A162 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.43■■■□□ 2.14
KRT40Q6A162 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
KRT40Q6A162 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
KRT40Q6A162 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC28.42■■■□□ 2.14
KRT40Q6A162 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
KRT40Q6A162 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
KRT40Q6A162 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
KRT40Q6A162 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
KRT40Q6A162 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
KRT40Q6A162 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
KRT40Q6A162 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
KRT40Q6A162 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC28.4■■■□□ 2.14
KRT40Q6A162 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
KRT40Q6A162 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
KRT40Q6A162 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
KRT40Q6A162 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC28.39■■■□□ 2.14
KRT40Q6A162 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.39■■■□□ 2.14
KRT40Q6A162 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
KRT40Q6A162 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
KRT40Q6A162 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
KRT40Q6A162 AC091060.1-201ENST00000623524 1766 ntBASIC28.38■■■□□ 2.13
KRT40Q6A162 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
KRT40Q6A162 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
KRT40Q6A162 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
KRT40Q6A162 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
KRT40Q6A162 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.36■■■□□ 2.13
KRT40Q6A162 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
KRT40Q6A162 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
KRT40Q6A162 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC28.36■■■□□ 2.13
KRT40Q6A162 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
KRT40Q6A162 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
KRT40Q6A162 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
KRT40Q6A162 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
KRT40Q6A162 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
KRT40Q6A162 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.34■■■□□ 2.13
KRT40Q6A162 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC28.34■■■□□ 2.13
KRT40Q6A162 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
KRT40Q6A162 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
KRT40Q6A162 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
KRT40Q6A162 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
KRT40Q6A162 RNF126P1-201ENST00000567452 1320 ntBASIC28.33■■■□□ 2.13
KRT40Q6A162 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
KRT40Q6A162 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
KRT40Q6A162 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
KRT40Q6A162 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
KRT40Q6A162 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
KRT40Q6A162 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
KRT40Q6A162 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
KRT40Q6A162 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
KRT40Q6A162 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.31■■■□□ 2.12
KRT40Q6A162 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
KRT40Q6A162 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.31■■■□□ 2.12
KRT40Q6A162 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC28.3■■■□□ 2.12
KRT40Q6A162 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
KRT40Q6A162 AL359504.2-201ENST00000605506 1601 ntBASIC28.29■■■□□ 2.12
KRT40Q6A162 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
KRT40Q6A162 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.29■■■□□ 2.12
KRT40Q6A162 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.29■■■□□ 2.12
KRT40Q6A162 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.29■■■□□ 2.12
KRT40Q6A162 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.29■■■□□ 2.12
KRT40Q6A162 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
KRT40Q6A162 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28.28■■■□□ 2.12
KRT40Q6A162 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
KRT40Q6A162 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
KRT40Q6A162 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
KRT40Q6A162 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
KRT40Q6A162 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
KRT40Q6A162 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC28.28■■■□□ 2.12
KRT40Q6A162 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.28■■■□□ 2.12
KRT40Q6A162 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.27■■■□□ 2.12
KRT40Q6A162 AC126177.7-201ENST00000547904 679 ntBASIC28.27■■■□□ 2.12
KRT40Q6A162 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
KRT40Q6A162 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
KRT40Q6A162 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms