Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USF3Q68DE3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USF3Q68DE3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USF3Q68DE3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
USF3Q68DE3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USF3Q68DE3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USF3Q68DE3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USF3Q68DE3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.11■□□□□ 0.97
USF3Q68DE3 AC026202.3-201ENST00000600805 1127 ntBASIC21.11■□□□□ 0.97
USF3Q68DE3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USF3Q68DE3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.1■□□□□ 0.97
USF3Q68DE3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.1■□□□□ 0.97
USF3Q68DE3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.1■□□□□ 0.97
USF3Q68DE3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USF3Q68DE3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.1■□□□□ 0.97
USF3Q68DE3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.1■□□□□ 0.97
USF3Q68DE3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.09■□□□□ 0.97
USF3Q68DE3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.09■□□□□ 0.97
USF3Q68DE3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
USF3Q68DE3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USF3Q68DE3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.09■□□□□ 0.97
USF3Q68DE3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
USF3Q68DE3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USF3Q68DE3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USF3Q68DE3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USF3Q68DE3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.08■□□□□ 0.97
USF3Q68DE3 SPCS2P3-201ENST00000500401 656 ntBASIC21.08■□□□□ 0.97
USF3Q68DE3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF3Q68DE3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF3Q68DE3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
USF3Q68DE3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF3Q68DE3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF3Q68DE3 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USF3Q68DE3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
USF3Q68DE3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USF3Q68DE3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.06■□□□□ 0.96
USF3Q68DE3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USF3Q68DE3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USF3Q68DE3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USF3Q68DE3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 AC142086.6-201ENST00000621154 1765 ntBASIC21.05■□□□□ 0.96
USF3Q68DE3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 AC009299.2-201ENST00000482477 511 ntBASIC21.05■□□□□ 0.96
USF3Q68DE3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.05■□□□□ 0.96
USF3Q68DE3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USF3Q68DE3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.05■□□□□ 0.96
USF3Q68DE3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.05■□□□□ 0.96
USF3Q68DE3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USF3Q68DE3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USF3Q68DE3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.04■□□□□ 0.96
USF3Q68DE3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.04■□□□□ 0.96
USF3Q68DE3 AC010980.1-201ENST00000587192 1142 ntBASIC21.04■□□□□ 0.96
USF3Q68DE3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.03■□□□□ 0.96
USF3Q68DE3 AP002414.2-202ENST00000590929 1450 ntBASIC21.03■□□□□ 0.96
USF3Q68DE3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.03■□□□□ 0.96
USF3Q68DE3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.03■□□□□ 0.96
USF3Q68DE3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USF3Q68DE3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.02■□□□□ 0.96
USF3Q68DE3 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.02■□□□□ 0.96
USF3Q68DE3 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.02■□□□□ 0.96
USF3Q68DE3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USF3Q68DE3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USF3Q68DE3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
USF3Q68DE3 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
USF3Q68DE3 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
USF3Q68DE3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.01■□□□□ 0.95
USF3Q68DE3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USF3Q68DE3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USF3Q68DE3 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USF3Q68DE3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21■□□□□ 0.95
USF3Q68DE3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21■□□□□ 0.95
USF3Q68DE3 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USF3Q68DE3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21■□□□□ 0.95
USF3Q68DE3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USF3Q68DE3 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21■□□□□ 0.95
USF3Q68DE3 KRT8P33-201ENST00000508125 1423 ntBASIC21■□□□□ 0.95
USF3Q68DE3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USF3Q68DE3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.99■□□□□ 0.95
USF3Q68DE3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
USF3Q68DE3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
USF3Q68DE3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
USF3Q68DE3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.99■□□□□ 0.95
USF3Q68DE3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USF3Q68DE3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
USF3Q68DE3 RP9P-202ENST00000450133 1212 ntBASIC20.98■□□□□ 0.95
USF3Q68DE3 AC139795.1-202ENST00000500444 432 ntBASIC20.98■□□□□ 0.95
USF3Q68DE3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USF3Q68DE3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USF3Q68DE3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USF3Q68DE3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.97■□□□□ 0.95
USF3Q68DE3 LINC01003-201ENST00000564834 1764 ntBASIC20.97■□□□□ 0.95
USF3Q68DE3 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USF3Q68DE3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USF3Q68DE3 BHLHE23-202ENST00000612929 1109 ntBASIC20.97■□□□□ 0.95
USF3Q68DE3 PVT1_1.1-201ENST00000615125 194 ntBASIC20.97■□□□□ 0.95
USF3Q68DE3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms