Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
TM4SF1P30408 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
TM4SF1P30408 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.22■■■□□ 2.59
TM4SF1P30408 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
TM4SF1P30408 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
TM4SF1P30408 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
TM4SF1P30408 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
TM4SF1P30408 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.22■■■□□ 2.59
TM4SF1P30408 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
TM4SF1P30408 AP002414.2-202ENST00000590929 1450 ntBASIC31.21■■■□□ 2.59
TM4SF1P30408 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
TM4SF1P30408 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
TM4SF1P30408 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.21■■■□□ 2.59
TM4SF1P30408 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
TM4SF1P30408 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
TM4SF1P30408 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.59
TM4SF1P30408 AL031848.2-201ENST00000607670 837 ntBASIC31.2■■■□□ 2.59
TM4SF1P30408 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.59
TM4SF1P30408 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
TM4SF1P30408 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
TM4SF1P30408 AL359504.2-201ENST00000605506 1601 ntBASIC31.2■■■□□ 2.58
TM4SF1P30408 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.19■■■□□ 2.58
TM4SF1P30408 AL356441.2-201ENST00000443009 864 ntBASIC31.19■■■□□ 2.58
TM4SF1P30408 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.19■■■□□ 2.58
TM4SF1P30408 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
TM4SF1P30408 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.19■■■□□ 2.58
TM4SF1P30408 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
TM4SF1P30408 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
TM4SF1P30408 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF1P30408 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
TM4SF1P30408 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
TM4SF1P30408 ABCB10P3-201ENST00000561950 2166 ntBASIC31.16■■■□□ 2.58
TM4SF1P30408 AC019171.1-201ENST00000601251 1056 ntBASIC31.16■■■□□ 2.58
TM4SF1P30408 AL139393.2-201ENST00000608721 2025 ntBASIC31.15■■■□□ 2.58
TM4SF1P30408 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
TM4SF1P30408 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
TM4SF1P30408 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.57
TM4SF1P30408 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.14■■■□□ 2.57
TM4SF1P30408 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.13■■■□□ 2.57
TM4SF1P30408 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.13■■■□□ 2.57
TM4SF1P30408 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
TM4SF1P30408 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.13■■■□□ 2.57
TM4SF1P30408 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC31.13■■■□□ 2.57
TM4SF1P30408 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
TM4SF1P30408 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.12■■■□□ 2.57
TM4SF1P30408 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
TM4SF1P30408 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
TM4SF1P30408 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
TM4SF1P30408 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC31.11■■■□□ 2.57
TM4SF1P30408 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
TM4SF1P30408 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.11■■■□□ 2.57
TM4SF1P30408 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.11■■■□□ 2.57
TM4SF1P30408 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.11■■■□□ 2.57
TM4SF1P30408 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.09■■■□□ 2.57
TM4SF1P30408 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
TM4SF1P30408 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
TM4SF1P30408 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
TM4SF1P30408 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
TM4SF1P30408 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.08■■■□□ 2.57
TM4SF1P30408 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
TM4SF1P30408 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
TM4SF1P30408 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
TM4SF1P30408 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
TM4SF1P30408 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.08■■■□□ 2.57
TM4SF1P30408 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
TM4SF1P30408 AC239859.2-201ENST00000444165 318 ntBASIC31.07■■■□□ 2.56
TM4SF1P30408 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
TM4SF1P30408 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
TM4SF1P30408 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.06■■■□□ 2.56
TM4SF1P30408 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
TM4SF1P30408 RNF146-205ENST00000477776 762 ntTSL 3 BASIC31.06■■■□□ 2.56
TM4SF1P30408 AC087393.1-201ENST00000582896 145 ntBASIC31.06■■■□□ 2.56
TM4SF1P30408 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.06■■■□□ 2.56
TM4SF1P30408 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
TM4SF1P30408 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
TM4SF1P30408 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
TM4SF1P30408 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.04■■■□□ 2.56
TM4SF1P30408 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
TM4SF1P30408 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.02■■■□□ 2.56
TM4SF1P30408 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
TM4SF1P30408 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
TM4SF1P30408 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
TM4SF1P30408 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.01■■■□□ 2.55
TM4SF1P30408 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.01■■■□□ 2.55
TM4SF1P30408 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
TM4SF1P30408 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
TM4SF1P30408 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.01■■■□□ 2.55
TM4SF1P30408 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
TM4SF1P30408 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31■■■□□ 2.55
TM4SF1P30408 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31■■■□□ 2.55
TM4SF1P30408 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
TM4SF1P30408 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.99■■■□□ 2.55
TM4SF1P30408 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
TM4SF1P30408 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
TM4SF1P30408 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
TM4SF1P30408 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.99■■■□□ 2.55
TM4SF1P30408 Z92544.1-202ENST00000571933 1220 ntBASIC30.99■■■□□ 2.55
TM4SF1P30408 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
TM4SF1P30408 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
TM4SF1P30408 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms