Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.68■■□□□ 1.06
COL8A1P27658 Z92544.1-202ENST00000571933 1220 ntBASIC21.68■■□□□ 1.06
COL8A1P27658 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL8A1P27658 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL8A1P27658 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL8A1P27658 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL8A1P27658 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.67■■□□□ 1.06
COL8A1P27658 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.67■■□□□ 1.06
COL8A1P27658 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.67■■□□□ 1.06
COL8A1P27658 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.67■■□□□ 1.06
COL8A1P27658 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.67■■□□□ 1.06
COL8A1P27658 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC21.67■■□□□ 1.06
COL8A1P27658 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL8A1P27658 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.66■■□□□ 1.06
COL8A1P27658 AC092666.2-201ENST00000613287 246 ntBASIC21.66■■□□□ 1.06
COL8A1P27658 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL8A1P27658 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
COL8A1P27658 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL8A1P27658 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL8A1P27658 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL8A1P27658 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL8A1P27658 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL8A1P27658 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
COL8A1P27658 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL8A1P27658 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL8A1P27658 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL8A1P27658 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL8A1P27658 UNC93B8-201ENST00000511903 705 ntBASIC21.63■■□□□ 1.05
COL8A1P27658 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.63■■□□□ 1.05
COL8A1P27658 MIR4787-201ENST00000607364 84 ntBASIC21.63■■□□□ 1.05
COL8A1P27658 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.63■■□□□ 1.05
COL8A1P27658 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL8A1P27658 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL8A1P27658 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL8A1P27658 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL8A1P27658 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.62■■□□□ 1.05
COL8A1P27658 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL8A1P27658 AL135925.1-201ENST00000605920 1701 ntBASIC21.62■■□□□ 1.05
COL8A1P27658 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL8A1P27658 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.62■■□□□ 1.05
COL8A1P27658 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
COL8A1P27658 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL8A1P27658 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.61■■□□□ 1.05
COL8A1P27658 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL8A1P27658 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL8A1P27658 KRT16P3-201ENST00000439127 1283 ntBASIC21.61■■□□□ 1.05
COL8A1P27658 KRT125P-201ENST00000546827 989 ntBASIC21.61■■□□□ 1.05
COL8A1P27658 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL8A1P27658 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.61■■□□□ 1.05
COL8A1P27658 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.61■■□□□ 1.05
COL8A1P27658 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
COL8A1P27658 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL8A1P27658 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.6■■□□□ 1.05
COL8A1P27658 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.6■■□□□ 1.05
COL8A1P27658 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
COL8A1P27658 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.6■■□□□ 1.05
COL8A1P27658 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
COL8A1P27658 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL8A1P27658 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL8A1P27658 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL8A1P27658 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
COL8A1P27658 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.59■■□□□ 1.05
COL8A1P27658 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL8A1P27658 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL8A1P27658 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
COL8A1P27658 LONRF2P2-201ENST00000439212 571 ntBASIC21.58■■□□□ 1.05
COL8A1P27658 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.58■■□□□ 1.05
COL8A1P27658 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL8A1P27658 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
COL8A1P27658 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
COL8A1P27658 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL8A1P27658 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.57■■□□□ 1.04
COL8A1P27658 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL8A1P27658 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL8A1P27658 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL8A1P27658 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.56■■□□□ 1.04
COL8A1P27658 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
COL8A1P27658 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL8A1P27658 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL8A1P27658 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL8A1P27658 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL8A1P27658 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL8A1P27658 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
COL8A1P27658 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL8A1P27658 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.55■■□□□ 1.04
COL8A1P27658 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL8A1P27658 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL8A1P27658 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
COL8A1P27658 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL8A1P27658 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
COL8A1P27658 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.53■■□□□ 1.04
COL8A1P27658 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.53■■□□□ 1.04
COL8A1P27658 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
COL8A1P27658 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL8A1P27658 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL8A1P27658 BX664725.1-201ENST00000438252 379 ntBASIC21.52■■□□□ 1.04
COL8A1P27658 TSPY9P-201ENST00000440215 945 ntBASIC21.52■■□□□ 1.04
COL8A1P27658 TSPY11P-201ENST00000442607 1045 ntBASIC21.52■■□□□ 1.04
COL8A1P27658 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.52■■□□□ 1.04
COL8A1P27658 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms