Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 AC008406.3-201ENST00000620001 1374 ntBASIC24.22■■□□□ 1.47
CDX4O14627 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CDX4O14627 AC019171.1-201ENST00000601251 1056 ntBASIC24.22■■□□□ 1.47
CDX4O14627 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
CDX4O14627 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
CDX4O14627 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CDX4O14627 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CDX4O14627 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.21■■□□□ 1.47
CDX4O14627 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.21■■□□□ 1.47
CDX4O14627 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC24.21■■□□□ 1.47
CDX4O14627 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDX4O14627 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CDX4O14627 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.2■■□□□ 1.46
CDX4O14627 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDX4O14627 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDX4O14627 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
CDX4O14627 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDX4O14627 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDX4O14627 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CDX4O14627 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.18■■□□□ 1.46
CDX4O14627 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CDX4O14627 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CDX4O14627 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CDX4O14627 Z92544.1-202ENST00000571933 1220 ntBASIC24.18■■□□□ 1.46
CDX4O14627 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CDX4O14627 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.17■■□□□ 1.46
CDX4O14627 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CDX4O14627 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.17■■□□□ 1.46
CDX4O14627 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
CDX4O14627 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.16■■□□□ 1.46
CDX4O14627 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC24.16■■□□□ 1.46
CDX4O14627 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.16■■□□□ 1.46
CDX4O14627 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CDX4O14627 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.15■■□□□ 1.46
CDX4O14627 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
CDX4O14627 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CDX4O14627 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
CDX4O14627 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
CDX4O14627 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.14■■□□□ 1.45
CDX4O14627 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.14■■□□□ 1.45
CDX4O14627 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.14■■□□□ 1.45
CDX4O14627 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
CDX4O14627 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
CDX4O14627 AL359504.2-201ENST00000605506 1601 ntBASIC24.13■■□□□ 1.45
CDX4O14627 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CDX4O14627 ST7-AS1-201ENST00000456775 1889 ntBASIC24.13■■□□□ 1.45
CDX4O14627 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CDX4O14627 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CDX4O14627 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.12■■□□□ 1.45
CDX4O14627 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CDX4O14627 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CDX4O14627 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC24.12■■□□□ 1.45
CDX4O14627 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.12■■□□□ 1.45
CDX4O14627 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CDX4O14627 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.11■■□□□ 1.45
CDX4O14627 AC087393.1-201ENST00000582896 145 ntBASIC24.11■■□□□ 1.45
CDX4O14627 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.1■■□□□ 1.45
CDX4O14627 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CDX4O14627 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CDX4O14627 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CDX4O14627 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CDX4O14627 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC24.09■■□□□ 1.45
CDX4O14627 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
CDX4O14627 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
CDX4O14627 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
CDX4O14627 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.08■■□□□ 1.45
CDX4O14627 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CDX4O14627 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CDX4O14627 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CDX4O14627 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.07■■□□□ 1.44
CDX4O14627 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.07■■□□□ 1.44
CDX4O14627 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.06■■□□□ 1.44
CDX4O14627 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CDX4O14627 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.06■■□□□ 1.44
CDX4O14627 LONRF2P2-201ENST00000439212 571 ntBASIC24.05■■□□□ 1.44
CDX4O14627 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
CDX4O14627 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CDX4O14627 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CDX4O14627 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.04■■□□□ 1.44
CDX4O14627 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDX4O14627 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
CDX4O14627 MIR638-201ENST00000385237 100 ntBASIC24.03■■□□□ 1.44
CDX4O14627 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
CDX4O14627 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDX4O14627 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.03■■□□□ 1.44
CDX4O14627 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDX4O14627 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDX4O14627 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.02■■□□□ 1.44
CDX4O14627 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDX4O14627 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.02■■□□□ 1.44
CDX4O14627 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.02■■□□□ 1.44
CDX4O14627 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.02■■□□□ 1.44
CDX4O14627 MIR4787-201ENST00000607364 84 ntBASIC24.02■■□□□ 1.44
CDX4O14627 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC24.02■■□□□ 1.44
CDX4O14627 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDX4O14627 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDX4O14627 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.01■■□□□ 1.43
CDX4O14627 RPS2P7-201ENST00000447334 885 ntBASIC24.01■■□□□ 1.43
CDX4O14627 KRT125P-201ENST00000546827 989 ntBASIC24.01■■□□□ 1.43
CDX4O14627 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms