Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
LRRC53A6NM62 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.48■■□□□ 1.83
LRRC53A6NM62 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.47■■□□□ 1.83
LRRC53A6NM62 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
LRRC53A6NM62 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
LRRC53A6NM62 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.47■■□□□ 1.83
LRRC53A6NM62 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
LRRC53A6NM62 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
LRRC53A6NM62 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
LRRC53A6NM62 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
LRRC53A6NM62 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
LRRC53A6NM62 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
LRRC53A6NM62 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
LRRC53A6NM62 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
LRRC53A6NM62 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.44■■□□□ 1.82
LRRC53A6NM62 DUX4L11-201ENST00000611504 1267 ntBASIC26.43■■□□□ 1.82
LRRC53A6NM62 DUX4L12-201ENST00000614593 1267 ntBASIC26.43■■□□□ 1.82
LRRC53A6NM62 DUX4L14-201ENST00000621227 1267 ntBASIC26.43■■□□□ 1.82
LRRC53A6NM62 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.43■■□□□ 1.82
LRRC53A6NM62 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.43■■□□□ 1.82
LRRC53A6NM62 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
LRRC53A6NM62 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
LRRC53A6NM62 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
LRRC53A6NM62 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
LRRC53A6NM62 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.42■■□□□ 1.82
LRRC53A6NM62 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
LRRC53A6NM62 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
LRRC53A6NM62 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
LRRC53A6NM62 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
LRRC53A6NM62 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.41■■□□□ 1.82
LRRC53A6NM62 ERN1-208ENST00000606895 2068 ntBASIC26.41■■□□□ 1.82
LRRC53A6NM62 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
LRRC53A6NM62 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
LRRC53A6NM62 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
LRRC53A6NM62 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
LRRC53A6NM62 MIR219A2-201ENST00000608502 1504 ntBASIC26.4■■□□□ 1.82
LRRC53A6NM62 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
LRRC53A6NM62 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
LRRC53A6NM62 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
LRRC53A6NM62 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
LRRC53A6NM62 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
LRRC53A6NM62 AC008813.1-201ENST00000536597 885 ntBASIC26.39■■□□□ 1.82
LRRC53A6NM62 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
LRRC53A6NM62 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.38■■□□□ 1.81
LRRC53A6NM62 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
LRRC53A6NM62 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
LRRC53A6NM62 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
LRRC53A6NM62 AC148477.6-201ENST00000623746 465 ntBASIC26.37■■□□□ 1.81
LRRC53A6NM62 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.37■■□□□ 1.81
LRRC53A6NM62 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
LRRC53A6NM62 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
LRRC53A6NM62 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.36■■□□□ 1.81
LRRC53A6NM62 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRRC53A6NM62 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
LRRC53A6NM62 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.35■■□□□ 1.81
LRRC53A6NM62 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
LRRC53A6NM62 AC010501.1-201ENST00000606270 1962 ntBASIC26.35■■□□□ 1.81
LRRC53A6NM62 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
LRRC53A6NM62 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LRRC53A6NM62 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.34■■□□□ 1.81
LRRC53A6NM62 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LRRC53A6NM62 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.34■■□□□ 1.81
LRRC53A6NM62 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
LRRC53A6NM62 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
LRRC53A6NM62 HLA-V-202ENST00000446817 847 ntBASIC26.33■■□□□ 1.81
LRRC53A6NM62 ZNRF2P2-203ENST00000454624 420 ntBASIC26.33■■□□□ 1.81
LRRC53A6NM62 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
LRRC53A6NM62 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
LRRC53A6NM62 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
LRRC53A6NM62 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
LRRC53A6NM62 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
LRRC53A6NM62 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
LRRC53A6NM62 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.32■■□□□ 1.8
LRRC53A6NM62 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.32■■□□□ 1.8
LRRC53A6NM62 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
LRRC53A6NM62 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.32■■□□□ 1.8
LRRC53A6NM62 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.31■■□□□ 1.8
LRRC53A6NM62 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.31■■□□□ 1.8
LRRC53A6NM62 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
LRRC53A6NM62 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.31■■□□□ 1.8
LRRC53A6NM62 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LRRC53A6NM62 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
LRRC53A6NM62 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LRRC53A6NM62 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LRRC53A6NM62 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
LRRC53A6NM62 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
LRRC53A6NM62 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms