Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AC005332.3-201ENST00000589904 676 ntBASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AL390719.2-201ENST00000606993 987 ntBASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 BNIP3P41-202ENST00000616656 861 ntBASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 AC005332.8-201ENST00000622750 2735 ntBASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS9D1Q9Y2B5 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-206ENST00000376090 689 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-209ENST00000376096 565 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-210ENST00000376099 610 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-214ENST00000418507 726 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 VENTXP5-201ENST00000523979 775 ntBASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 AL390728.6-201ENST00000566446 1246 ntBASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 LINC01451-201ENST00000623792 534 ntBASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 AC133963.1-201ENST00000504166 1679 ntBASIC17.74■□□□□ 0.43
VPS9D1Q9Y2B5 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS9D1Q9Y2B5 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS9D1Q9Y2B5 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS9D1Q9Y2B5 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms