Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF38Q9H0F5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF38Q9H0F5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.43■□□□□ 0.54
RNF38Q9H0F5 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF38Q9H0F5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF38Q9H0F5 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF38Q9H0F5 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 AC139887.3-201ENST00000568585 713 ntBASIC18.42■□□□□ 0.54
RNF38Q9H0F5 AC004817.3-201ENST00000602957 2129 ntBASIC18.42■□□□□ 0.54
RNF38Q9H0F5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 AC009949.1-201ENST00000623048 1830 ntBASIC18.42■□□□□ 0.54
RNF38Q9H0F5 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF38Q9H0F5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 AC093909.1-201ENST00000504731 1122 ntBASIC18.41■□□□□ 0.54
RNF38Q9H0F5 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 AC012640.2-201ENST00000561606 901 ntBASIC18.41■□□□□ 0.54
RNF38Q9H0F5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 MTDHP4-201ENST00000600287 670 ntBASIC18.41■□□□□ 0.54
RNF38Q9H0F5 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.41■□□□□ 0.54
RNF38Q9H0F5 AL139288.1-201ENST00000623748 933 ntBASIC18.41■□□□□ 0.54
RNF38Q9H0F5 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 AC079776.2-201ENST00000641154 1609 ntBASIC18.41■□□□□ 0.54
RNF38Q9H0F5 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
RNF38Q9H0F5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 AL049757.1-201ENST00000616842 1596 ntBASIC18.4■□□□□ 0.54
RNF38Q9H0F5 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 AC103564.2-201ENST00000432853 1299 ntBASIC18.4■□□□□ 0.54
RNF38Q9H0F5 BX005266.1-201ENST00000473402 457 ntBASIC18.4■□□□□ 0.54
RNF38Q9H0F5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF38Q9H0F5 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms