Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPRD1AQ96P16 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPRD1AQ96P16 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPRD1AQ96P16 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.37■□□□□ 0.53
RPRD1AQ96P16 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPRD1AQ96P16 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPRD1AQ96P16 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPRD1AQ96P16 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 AC097374.2-201ENST00000618617 1306 ntBASIC18.35■□□□□ 0.53
RPRD1AQ96P16 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 AC096633.1-201ENST00000422446 749 ntBASIC18.35■□□□□ 0.53
RPRD1AQ96P16 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 KRT16P4-201ENST00000453883 522 ntBASIC18.35■□□□□ 0.53
RPRD1AQ96P16 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 LINC01711-201ENST00000598340 967 ntBASIC18.35■□□□□ 0.53
RPRD1AQ96P16 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RPRD1AQ96P16 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 RCN1P2-201ENST00000398357 915 ntBASIC18.34■□□□□ 0.53
RPRD1AQ96P16 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 AC007967.3-201ENST00000434308 558 ntBASIC18.34■□□□□ 0.53
RPRD1AQ96P16 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 AC111152.3-201ENST00000569699 673 ntBASIC18.34■□□□□ 0.53
RPRD1AQ96P16 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms