Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 AL390961.4-201ENST00000623958 2535 ntBASIC16.49■□□□□ 0.23
RNF4P78317 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 AC007967.3-201ENST00000434308 558 ntBASIC16.49■□□□□ 0.23
RNF4P78317 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.49■□□□□ 0.23
RNF4P78317 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 AC111152.3-201ENST00000569699 673 ntBASIC16.49■□□□□ 0.23
RNF4P78317 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 MIR5100-201ENST00000579544 119 ntBASIC16.49■□□□□ 0.23
RNF4P78317 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 LINC01711-201ENST00000598340 967 ntBASIC16.49■□□□□ 0.23
RNF4P78317 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.49■□□□□ 0.23
RNF4P78317 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.49■□□□□ 0.23
RNF4P78317 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNF4P78317 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.48■□□□□ 0.23
RNF4P78317 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 UNC93B7-201ENST00000509439 705 ntBASIC16.48■□□□□ 0.23
RNF4P78317 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.48■□□□□ 0.23
RNF4P78317 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.48■□□□□ 0.23
RNF4P78317 AL591684.3-201ENST00000605187 298 ntBASIC16.48■□□□□ 0.23
RNF4P78317 IFNL4P1-201ENST00000607083 540 ntBASIC16.48■□□□□ 0.23
RNF4P78317 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.48■□□□□ 0.23
RNF4P78317 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF4P78317 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF4P78317 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF4P78317 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 AC010460.3-201ENST00000511359 1579 ntBASIC16.47■□□□□ 0.23
RNF4P78317 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF4P78317 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 INTS4P1-201ENST00000438455 1935 ntBASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms