Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
HOXA1P49639 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HOXA1P49639 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
HOXA1P49639 KRT16P1-201ENST00000399124 1418 ntBASIC14.83□□□□□ -0.03
HOXA1P49639 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXA1P49639 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXA1P49639 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXA1P49639 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HOXA1P49639 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 AC138028.4-201ENST00000564984 1845 ntBASIC14.83□□□□□ -0.04
HOXA1P49639 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXA1P49639 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
HOXA1P49639 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 AL353807.1-201ENST00000427475 662 ntBASIC14.83□□□□□ -0.04
HOXA1P49639 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.83□□□□□ -0.04
HOXA1P49639 KSR1P1-201ENST00000446298 240 ntBASIC14.83□□□□□ -0.04
HOXA1P49639 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXA1P49639 MMAB-206ENST00000540016 945 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXA1P49639 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HOXA1P49639 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 AC008556.1-201ENST00000610908 2040 ntBASIC14.83□□□□□ -0.04
HOXA1P49639 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXA1P49639 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXA1P49639 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC14.82□□□□□ -0.04
HOXA1P49639 ESRRAP1-201ENST00000400596 1257 ntBASIC14.82□□□□□ -0.04
HOXA1P49639 FAM207BP-201ENST00000447172 505 ntBASIC14.82□□□□□ -0.04
HOXA1P49639 AC133681.1-201ENST00000465482 601 ntBASIC14.82□□□□□ -0.04
HOXA1P49639 RPS2P4-201ENST00000476944 856 ntBASIC14.82□□□□□ -0.04
HOXA1P49639 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.82□□□□□ -0.04
HOXA1P49639 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXA1P49639 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HOXA1P49639 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXA1P49639 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms