Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ACTG1P4-201ENST00000425123 1122 ntBASIC16.96■□□□□ 0.31
COL5A1P20908 SIGLEC30P-201ENST00000455569 941 ntBASIC16.96■□□□□ 0.31
COL5A1P20908 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
COL5A1P20908 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.96■□□□□ 0.31
COL5A1P20908 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.96■□□□□ 0.31
COL5A1P20908 PHGDH-209ENST00000641074 1780 ntBASIC16.96■□□□□ 0.31
COL5A1P20908 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.96■□□□□ 0.31
COL5A1P20908 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.96■□□□□ 0.31
COL5A1P20908 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.96■□□□□ 0.31
COL5A1P20908 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
COL5A1P20908 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.96■□□□□ 0.31
COL5A1P20908 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL5A1P20908 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL5A1P20908 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.96■□□□□ 0.3
COL5A1P20908 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL5A1P20908 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL5A1P20908 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.96■□□□□ 0.3
COL5A1P20908 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
COL5A1P20908 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.96■□□□□ 0.3
COL5A1P20908 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL5A1P20908 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL5A1P20908 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.96■□□□□ 0.3
COL5A1P20908 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.96■□□□□ 0.3
COL5A1P20908 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.96■□□□□ 0.3
COL5A1P20908 AL031432.2-201ENST00000566714 459 ntBASIC16.96■□□□□ 0.3
COL5A1P20908 AL928711.1-201ENST00000570165 459 ntBASIC16.96■□□□□ 0.3
COL5A1P20908 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.96■□□□□ 0.3
COL5A1P20908 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.96■□□□□ 0.3
COL5A1P20908 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL5A1P20908 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.95■□□□□ 0.3
COL5A1P20908 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.95■□□□□ 0.3
COL5A1P20908 CEND1P1-201ENST00000451006 455 ntBASIC16.95■□□□□ 0.3
COL5A1P20908 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.95■□□□□ 0.3
COL5A1P20908 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 AC068137.2-201ENST00000605408 478 ntBASIC16.95■□□□□ 0.3
COL5A1P20908 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.95■□□□□ 0.3
COL5A1P20908 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.95■□□□□ 0.3
COL5A1P20908 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.95■□□□□ 0.3
COL5A1P20908 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL5A1P20908 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.94■□□□□ 0.3
COL5A1P20908 DDX43P3-201ENST00000441064 443 ntBASIC16.94■□□□□ 0.3
COL5A1P20908 ACTG1P14-201ENST00000446382 1122 ntBASIC16.94■□□□□ 0.3
COL5A1P20908 STK19B-204ENST00000512515 211 ntBASIC16.94■□□□□ 0.3
COL5A1P20908 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.94■□□□□ 0.3
COL5A1P20908 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.94■□□□□ 0.3
COL5A1P20908 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.94■□□□□ 0.3
COL5A1P20908 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.94■□□□□ 0.3
COL5A1P20908 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 AC004877.2-201ENST00000623941 599 ntBASIC16.94■□□□□ 0.3
COL5A1P20908 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.94■□□□□ 0.3
COL5A1P20908 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.94■□□□□ 0.3
COL5A1P20908 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL5A1P20908 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms