Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 AC139887.4-201ENST00000607877 719 ntBASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 AC012306.2-201ENST00000609350 630 ntBASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 DDX43P3-201ENST00000441064 443 ntBASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 AC116407.2-201ENST00000613639 860 ntBASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 LINC01451-201ENST00000623792 534 ntBASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 AC133561.5-201ENST00000635547 218 ntBASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 HTR7P1-202ENST00000624664 4411 ntBASIC18.11■□□□□ 0.49
TCRBV7S3A2A0A539 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 AC073508.3-201ENST00000619697 1419 ntBASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 LIN28AP1-201ENST00000429574 405 ntBASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 ATP5G1P1-201ENST00000448724 379 ntBASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 KRT18P38-201ENST00000449496 1282 ntBASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TCRBV7S3A2A0A539 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms