Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 FLJ13224-201ENST00000313737 1514 ntBASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM39Q9HCM9 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 POM121L3P-201ENST00000419331 1163 ntBASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AC125634.1-201ENST00000438758 1403 ntBASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AC099336.1-202ENST00000602961 463 ntBASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AL138831.2-201ENST00000606564 490 ntBASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 BCL2-203ENST00000589955 5011 ntBASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 AP000997.3-201ENST00000623333 2250 ntBASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM39Q9HCM9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AC009533.2-201ENST00000543664 586 ntBASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms