Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
CHRNA1P02708 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA1P02708 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.33■□□□□ 0.68
CHRNA1P02708 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA1P02708 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA1P02708 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA1P02708 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 ELK2BP-201ENST00000415014 1224 ntBASIC19.32■□□□□ 0.68
CHRNA1P02708 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.32■□□□□ 0.68
CHRNA1P02708 DNAJB3-201ENST00000446806 729 ntBASIC19.32■□□□□ 0.68
CHRNA1P02708 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA1P02708 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.32■□□□□ 0.68
CHRNA1P02708 MIR3687-2-201ENST00000577708 61 ntBASIC19.32■□□□□ 0.68
CHRNA1P02708 MIR3687-1-201ENST00000614492 61 ntBASIC19.32■□□□□ 0.68
CHRNA1P02708 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA1P02708 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA1P02708 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHRNA1P02708 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA1P02708 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA1P02708 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 AC120498.9-201ENST00000339021 3867 ntBASIC19.32■□□□□ 0.68
CHRNA1P02708 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA1P02708 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA1P02708 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA1P02708 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
CHRNA1P02708 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 AIRN-201ENST00000601203 4374 ntBASIC19.31■□□□□ 0.68
CHRNA1P02708 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CHRNA1P02708 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.31■□□□□ 0.68
CHRNA1P02708 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.31■□□□□ 0.68
CHRNA1P02708 AC002347.1-201ENST00000569543 541 ntBASIC19.31■□□□□ 0.68
CHRNA1P02708 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.31■□□□□ 0.68
CHRNA1P02708 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CHRNA1P02708 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.31■□□□□ 0.68
CHRNA1P02708 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA1P02708 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA1P02708 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CHRNA1P02708 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CHRNA1P02708 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 AP001160.2-201ENST00000596071 487 ntBASIC19.3■□□□□ 0.68
CHRNA1P02708 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.3■□□□□ 0.68
CHRNA1P02708 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.3■□□□□ 0.68
CHRNA1P02708 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHRNA1P02708 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA1P02708 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA1P02708 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA1P02708 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA1P02708 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms