Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM38O00635 LINC00896-202ENST00000609602 2128 ntBASIC17.99■□□□□ 0.47
TRIM38O00635 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM38O00635 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM38O00635 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.99■□□□□ 0.47
TRIM38O00635 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TRIM38O00635 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
TRIM38O00635 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TRIM38O00635 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRIM38O00635 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM38O00635 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
TRIM38O00635 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
TRIM38O00635 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TRIM38O00635 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM38O00635 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
TRIM38O00635 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.98■□□□□ 0.47
TRIM38O00635 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM38O00635 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM38O00635 AC024563.2-201ENST00000603282 481 ntBASIC17.98■□□□□ 0.47
TRIM38O00635 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 AL592071.1-201ENST00000611956 408 ntBASIC17.98■□□□□ 0.47
TRIM38O00635 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.98■□□□□ 0.47
TRIM38O00635 AC068587.9-201ENST00000641814 219 ntBASIC17.98■□□□□ 0.47
TRIM38O00635 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM38O00635 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM38O00635 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM38O00635 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM38O00635 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM38O00635 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM38O00635 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.97■□□□□ 0.47
TRIM38O00635 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM38O00635 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 AP002469.2-201ENST00000531724 424 ntBASIC17.97■□□□□ 0.47
TRIM38O00635 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.97■□□□□ 0.47
TRIM38O00635 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM38O00635 Z69720.1-201ENST00000601483 472 ntBASIC17.97■□□□□ 0.47
TRIM38O00635 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM38O00635 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 AC124864.1-201ENST00000623408 392 ntBASIC17.97■□□□□ 0.47
TRIM38O00635 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
TRIM38O00635 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM38O00635 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM38O00635 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRIM38O00635 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM38O00635 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRIM38O00635 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM38O00635 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM38O00635 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM38O00635 IGHV3-47-201ENST00000425060 335 ntBASIC17.96■□□□□ 0.47
TRIM38O00635 KRT16P4-201ENST00000453883 522 ntBASIC17.96■□□□□ 0.47
TRIM38O00635 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM38O00635 RN7SL606P-201ENST00000472779 293 ntBASIC17.96■□□□□ 0.47
TRIM38O00635 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM38O00635 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms