Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.07■□□□□ 0.8
DDX39AO00148 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
DDX39AO00148 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.07■□□□□ 0.8
DDX39AO00148 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.07■□□□□ 0.8
DDX39AO00148 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.07■□□□□ 0.8
DDX39AO00148 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
DDX39AO00148 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.07■□□□□ 0.8
DDX39AO00148 FAAHP1-202ENST00000446499 1238 ntBASIC20.07■□□□□ 0.8
DDX39AO00148 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.07■□□□□ 0.8
DDX39AO00148 AC011467.2-201ENST00000598425 242 ntBASIC20.07■□□□□ 0.8
DDX39AO00148 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.07■□□□□ 0.8
DDX39AO00148 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
DDX39AO00148 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.07■□□□□ 0.8
DDX39AO00148 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 AC010460.3-201ENST00000511359 1579 ntBASIC20.07■□□□□ 0.8
DDX39AO00148 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.07■□□□□ 0.8
DDX39AO00148 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX39AO00148 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.06■□□□□ 0.8
DDX39AO00148 SAPCD2P3-201ENST00000455031 850 ntBASIC20.06■□□□□ 0.8
DDX39AO00148 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.06■□□□□ 0.8
DDX39AO00148 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.06■□□□□ 0.8
DDX39AO00148 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.06■□□□□ 0.8
DDX39AO00148 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.06■□□□□ 0.8
DDX39AO00148 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 BICD1-207ENST00000551848 1962 ntBASIC20.06■□□□□ 0.8
DDX39AO00148 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
DDX39AO00148 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX39AO00148 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 AC009078.2-202ENST00000463353 338 ntBASIC20.05■□□□□ 0.8
DDX39AO00148 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX39AO00148 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
DDX39AO00148 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX39AO00148 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.04■□□□□ 0.8
DDX39AO00148 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
DDX39AO00148 ABALON-201ENST00000629058 1903 ntBASIC20.04■□□□□ 0.8
DDX39AO00148 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX39AO00148 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
DDX39AO00148 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX39AO00148 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms