Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 COX5BP2-201ENST00000392354 334 ntBASIC17.98■□□□□ 0.47
LHX3Q9UBR4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 AC006116.8-202ENST00000587620 1550 ntBASIC17.98■□□□□ 0.47
LHX3Q9UBR4 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LHX3Q9UBR4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 AC122714.2-201ENST00000502787 707 ntBASIC17.97■□□□□ 0.47
LHX3Q9UBR4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LHX3Q9UBR4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 AKR1C7P-201ENST00000305623 895 ntBASIC17.96■□□□□ 0.47
LHX3Q9UBR4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 AC111152.3-201ENST00000569699 673 ntBASIC17.96■□□□□ 0.47
LHX3Q9UBR4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LHX3Q9UBR4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms