Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 DUTP2-201ENST00000519164 463 ntBASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM54Q9BYV2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRIM54Q9BYV2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 PRORSD1P-202ENST00000563365 2154 ntBASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 LINC01238-205ENST00000567549 1107 ntBASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 KRT18P55-202ENST00000578578 1546 ntBASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 SIRPAP1-201ENST00000448467 1770 ntBASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM54Q9BYV2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SPDYE15P-201ENST00000424157 909 ntBASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms