Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC29.84■■■□□ 2.373e-6■■□□□ 13.2
UPF1Q92900 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC24.43■■□□□ 1.53e-6■■□□□ 13.2
UPF1Q92900 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC23.98■■□□□ 1.433e-6■■□□□ 13.2
UPF1Q92900 NAA60-208ENST00000570819 833 ntTSL 2 BASIC23.89■■□□□ 1.413e-6■■□□□ 13.2
UPF1Q92900 NAA60-231ENST00000575754 761 ntTSL 222.17■■□□□ 1.143e-6■■□□□ 13.2
UPF1Q92900 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC19.85■□□□□ 0.773e-6■■□□□ 13.2
UPF1Q92900 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC18.19■□□□□ 0.53e-6■■□□□ 13.2
UPF1Q92900 NAA60-234ENST00000576819 578 ntTSL 216.13■□□□□ 0.173e-6■■□□□ 13.2
UPF1Q92900 SLC9A3R2-205ENST00000564033 1087 ntTSL 227.55■■■□□ 26e-10■■□□□ 13.2
UPF1Q92900 SLC9A3R2-203ENST00000561844 738 ntTSL 320.63■□□□□ 0.896e-10■■□□□ 13.2
UPF1Q92900 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC19.63■□□□□ 0.736e-10■■□□□ 13.2
UPF1Q92900 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.35■□□□□ 0.213e-8■■□□□ 13.2
UPF1Q92900 KLHL36-202ENST00000325279 6488 ntTSL 213.45□□□□□ -0.267e-7■■□□□ 13.2
UPF1Q92900 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.052e-7■■□□□ 13.2
UPF1Q92900 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.02□□□□□ -1.612e-6■■□□□ 13.2
UPF1Q92900 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC27.07■■□□□ 1.921e-13■■□□□ 13.2
UPF1Q92900 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.631e-13■■□□□ 13.2
UPF1Q92900 PDCL-201ENST00000259467 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.542e-16■■□□□ 13.2
UPF1Q92900 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.853e-6■■□□□ 13.2
UPF1Q92900 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC24.97■■□□□ 1.593e-6■■□□□ 13.2
UPF1Q92900 AC073111.4-201ENST00000483664 582 ntTSL 420.04■□□□□ 0.83e-6■■□□□ 13.2
UPF1Q92900 RTN3-207ENST00000536011 992 ntTSL 219.13■□□□□ 0.652e-6■■□□□ 13.2
UPF1Q92900 SHF-203ENST00000558294 604 ntAPPRIS ALT2 TSL 216.21■□□□□ 0.192e-6■■□□□ 13.2
UPF1Q92900 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.41■□□□□ 0.71e-6■■□□□ 13.2
UPF1Q92900 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.01■□□□□ 0.151e-6■■□□□ 13.2
UPF1Q92900 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.031e-6■■□□□ 13.2
UPF1Q92900 CDC25B-201ENST00000245960 3597 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.481e-6■■□□□ 13.2
UPF1Q92900 BRD2-206ENST00000456339 887 ntTSL 422.45■■□□□ 1.181e-7■■□□□ 13.2
UPF1Q92900 BRD2-213ENST00000495733 3404 ntTSL 214.3□□□□□ -0.121e-7■■□□□ 13.2
UPF1Q92900 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC34.51■■■■□ 3.125e-7■■□□□ 13.2
UPF1Q92900 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.715e-7■■□□□ 13.2
UPF1Q92900 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC24.73■■□□□ 1.555e-7■■□□□ 13.2
UPF1Q92900 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.365e-25■■□□□ 13.2
UPF1Q92900 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.735e-25■■□□□ 13.2
UPF1Q92900 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC19.33■□□□□ 0.685e-25■■□□□ 13.2
UPF1Q92900 TOMM5-202ENST00000377773 808 ntTSL 1 (best) BASIC16.67■□□□□ 0.265e-25■■□□□ 13.2
UPF1Q92900 AL513165.2-202ENST00000541804 1514 ntTSL 1 (best)15.52■□□□□ 0.075e-25■■□□□ 13.2
UPF1Q92900 TOMM5-204ENST00000540941 3071 ntTSL 1 (best)11.56□□□□□ -0.565e-25■■□□□ 13.2
UPF1Q92900 AL513165.2-201ENST00000544475 2999 ntTSL 1 (best)11.2□□□□□ -0.625e-25■■□□□ 13.2
UPF1Q92900 CD3EAP-201ENST00000309424 3286 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.792e-6■■□□□ 13.2
UPF1Q92900 G3BP2-201ENST00000357854 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.42e-15■■□□□ 13.1
UPF1Q92900 ANKRD13A-201ENST00000261739 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.191e-7■■□□□ 13.1
UPF1Q92900 ANKRD13A-210ENST00000553251 3315 ntTSL 29□□□□□ -0.971e-7■■□□□ 13.1
UPF1Q92900 KIF5A-201ENST00000286452 3527 ntTSL 2 BASIC10.73□□□□□ -0.692e-6■■□□□ 13.1
UPF1Q92900 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.11e-7■■□□□ 13.1
UPF1Q92900 SMYD3-203ENST00000391836 732 ntTSL 518.4■□□□□ 0.541e-7■■□□□ 13.1
UPF1Q92900 SMYD3-202ENST00000366517 1372 ntTSL 1 (best)12.1□□□□□ -0.471e-7■■□□□ 13.1
UPF1Q92900 SMYD3-217ENST00000493441 823 ntTSL 212.08□□□□□ -0.481e-7■■□□□ 13.1
UPF1Q92900 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC11.59□□□□□ -0.551e-7■■□□□ 13.1
UPF1Q92900 SMYD3-209ENST00000470510 1042 ntTSL 511.56□□□□□ -0.561e-7■■□□□ 13.1
UPF1Q92900 SMYD3-208ENST00000464398 540 ntTSL 311.08□□□□□ -0.641e-7■■□□□ 13.1
UPF1Q92900 SMYD3-216ENST00000492487 634 ntTSL 311.08□□□□□ -0.641e-7■■□□□ 13.1
UPF1Q92900 SMYD3-201ENST00000366516 1863 ntTSL 1 (best)9.98□□□□□ -0.811e-7■■□□□ 13.1
UPF1Q92900 SMYD3-213ENST00000488153 653 ntTSL 38.34□□□□□ -1.071e-7■■□□□ 13.1
UPF1Q92900 MBOAT7-214ENST00000495968 465 ntTSL 538.81■■■■□ 3.83e-6■■□□□ 13.1
UPF1Q92900 UBXN6-206ENST00000590466 803 ntTSL 328.28■■■□□ 2.126e-7■■□□□ 13.1
UPF1Q92900 MBOAT7-210ENST00000474910 629 ntTSL 228.01■■■□□ 2.073e-6■■□□□ 13.1
UPF1Q92900 UBXN6-203ENST00000587009 1967 ntTSL 223.78■■□□□ 1.46e-7■■□□□ 13.1
UPF1Q92900 UBXN6-207ENST00000591919 1613 ntTSL 522.99■■□□□ 1.276e-7■■□□□ 13.1
UPF1Q92900 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.226e-7■■□□□ 13.1
UPF1Q92900 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC22.34■■□□□ 1.176e-7■■□□□ 13.1
UPF1Q92900 DEF8-207ENST00000562163 473 ntTSL 422.04■■□□□ 1.123e-6■■□□□ 13.1
UPF1Q92900 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.67■■□□□ 1.064e-9■■□□□ 13.1
UPF1Q92900 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC21.62■■□□□ 1.053e-6■■□□□ 13.1
UPF1Q92900 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.922e-13■■□□□ 13.1
UPF1Q92900 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.92■□□□□ 0.783e-6■■□□□ 13.1
UPF1Q92900 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.92■□□□□ 0.464e-9■■□□□ 13.1
UPF1Q92900 RNF220-210ENST00000474394 810 ntTSL 316.01■□□□□ 0.158e-15■■□□□ 13.1
UPF1Q92900 UBXN6-205ENST00000588238 4598 nt15.93■□□□□ 0.146e-7■■□□□ 13.1
UPF1Q92900 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.61□□□□□ -0.073e-6■■□□□ 13.1
UPF1Q92900 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.143e-6■■□□□ 13.1
UPF1Q92900 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.352e-13■■□□□ 13.1
UPF1Q92900 YWHAZ-207ENST00000395958 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.382e-13■■□□□ 13.1
UPF1Q92900 FAAP100-203ENST00000443656 3822 ntTSL 1 (best)12.63□□□□□ -0.393e-6■■□□□ 13.1
UPF1Q92900 LAD1-205ENST00000503578 582 ntTSL 512.49□□□□□ -0.414e-9■■□□□ 13.1
UPF1Q92900 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC11.07□□□□□ -0.643e-6■■□□□ 13.1
UPF1Q92900 YWHAZ-222ENST00000523848 664 ntTSL 59.57□□□□□ -0.882e-13■■□□□ 13.1
UPF1Q92900 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.352e-13■■□□□ 13.1
UPF1Q92900 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.372e-13■■□□□ 13.1
UPF1Q92900 MBD3-204ENST00000585967 583 ntTSL 424.84■■□□□ 1.572e-6■■□□□ 13.1
UPF1Q92900 CYTH1-216ENST00000591574 1043 ntTSL 335.47■■■■□ 3.271e-10■■□□□ 13.1
UPF1Q92900 CYTH1-205ENST00000586175 874 ntTSL 213.94□□□□□ -0.181e-10■■□□□ 13.1
UPF1Q92900 CYTH1-207ENST00000586430 573 ntTSL 38.85□□□□□ -0.991e-10■■□□□ 13.1
UPF1Q92900 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.38■□□□□ 0.539e-8■■□□□ 13.1
UPF1Q92900 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.536e-8■■□□□ 13.1
UPF1Q92900 TMEM184B-208ENST00000466117 542 ntTSL 423.87■■□□□ 1.411e-6■■□□□ 13.1
UPF1Q92900 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.081e-6■■□□□ 13.1
UPF1Q92900 AZGP1-204ENST00000477251 787 ntTSL 220.65■□□□□ 0.98e-13■■□□□ 13.1
UPF1Q92900 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.821e-6■■□□□ 13.1
UPF1Q92900 TMEM184B-204ENST00000411679 555 ntTSL 519.9■□□□□ 0.781e-6■■□□□ 13.1
UPF1Q92900 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.611e-6■■□□□ 13.1
UPF1Q92900 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.61e-6■■□□□ 13.1
UPF1Q92900 TMEM184B-206ENST00000457534 555 ntTSL 518.74■□□□□ 0.591e-6■■□□□ 13.1
UPF1Q92900 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.551e-6■■□□□ 13.1
UPF1Q92900 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.381e-6■■□□□ 13.1
UPF1Q92900 TGFA-204ENST00000419940 681 ntTSL 517.1■□□□□ 0.331e-6■■□□□ 13.1
UPF1Q92900 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.311e-6■■□□□ 13.1
UPF1Q92900 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.241e-6■■□□□ 13.1
UPF1Q92900 PLSCR4-202ENST00000383083 3033 ntTSL 5 BASIC15.94■□□□□ 0.141e-6■■□□□ 13.1
UPF1Q92900 LDHA-205ENST00000422447 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.131e-6■■□□□ 13.1
Retrieved 100 of 15,879 protein–RNA pairs in 82.4 ms