Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE3Q6ZMZ3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE3Q6ZMZ3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SYNE3Q6ZMZ3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.07■□□□□ 0.96
SYNE3Q6ZMZ3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.07■□□□□ 0.96
SYNE3Q6ZMZ3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SYNE3Q6ZMZ3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 SLC25A6P5-201ENST00000435663 894 ntBASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 KRT8P26-201ENST00000534154 1276 ntBASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SYNE3Q6ZMZ3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 LETM1P2-201ENST00000597330 2178 ntBASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 BX276092.5-203ENST00000456199 560 ntBASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 AC116407.4-201ENST00000623319 1061 ntBASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 PCDHB18P-201ENST00000524813 2368 ntBASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 IER3-202ENST00000376377 1350 ntBASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE3Q6ZMZ3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 KRT18P55-202ENST00000578578 1546 ntBASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 AL121672.3-201ENST00000608644 468 ntBASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 IGHV3-41-201ENST00000613121 348 ntBASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms