Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.32■□□□□ 0.36
FOXA1P55317 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA1P55317 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXA1P55317 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA1P55317 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA1P55317 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA1P55317 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 KRT18P22-201ENST00000402024 1347 ntBASIC17.31■□□□□ 0.36
FOXA1P55317 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA1P55317 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 AP000523.1-201ENST00000398242 1049 ntBASIC17.31■□□□□ 0.36
FOXA1P55317 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA1P55317 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.31■□□□□ 0.36
FOXA1P55317 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 HLA-J-201ENST00000462773 1622 ntBASIC17.31■□□□□ 0.36
FOXA1P55317 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA1P55317 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXA1P55317 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXA1P55317 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 AD000864.1-201ENST00000624076 2295 ntBASIC17.3■□□□□ 0.36
FOXA1P55317 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXA1P55317 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA1P55317 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA1P55317 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA1P55317 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.29■□□□□ 0.36
FOXA1P55317 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.29■□□□□ 0.36
FOXA1P55317 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
FOXA1P55317 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
FOXA1P55317 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms