Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.91■□□□□ 0.62
LHX1P48742 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX1P48742 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX1P48742 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LHX1P48742 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LHX1P48742 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX1P48742 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LHX1P48742 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.91■□□□□ 0.62
LHX1P48742 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LHX1P48742 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.9■□□□□ 0.62
LHX1P48742 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.9■□□□□ 0.62
LHX1P48742 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.9■□□□□ 0.62
LHX1P48742 AL160237.2-201ENST00000556165 472 ntBASIC18.9■□□□□ 0.62
LHX1P48742 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 AC104692.2-201ENST00000603054 253 ntBASIC18.9■□□□□ 0.62
LHX1P48742 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.9■□□□□ 0.62
LHX1P48742 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LHX1P48742 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.9■□□□□ 0.62
LHX1P48742 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
LHX1P48742 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
LHX1P48742 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
LHX1P48742 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
LHX1P48742 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LHX1P48742 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.89■□□□□ 0.61
LHX1P48742 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LHX1P48742 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LHX1P48742 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.89■□□□□ 0.61
LHX1P48742 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.89■□□□□ 0.61
LHX1P48742 AC079781.3-201ENST00000449110 356 ntBASIC18.89■□□□□ 0.61
LHX1P48742 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.89■□□□□ 0.61
LHX1P48742 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.89■□□□□ 0.61
LHX1P48742 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.89■□□□□ 0.61
LHX1P48742 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LHX1P48742 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.89■□□□□ 0.61
LHX1P48742 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.89■□□□□ 0.61
LHX1P48742 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.89■□□□□ 0.61
LHX1P48742 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX1P48742 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
LHX1P48742 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.88■□□□□ 0.61
LHX1P48742 AL354751.1-201ENST00000412768 1863 ntBASIC18.88■□□□□ 0.61
LHX1P48742 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.88■□□□□ 0.61
LHX1P48742 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.88■□□□□ 0.61
LHX1P48742 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.88■□□□□ 0.61
LHX1P48742 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.88■□□□□ 0.61
LHX1P48742 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.88■□□□□ 0.61
LHX1P48742 AC008608.2-201ENST00000606089 416 ntBASIC18.88■□□□□ 0.61
LHX1P48742 AP001269.4-201ENST00000609611 512 ntBASIC18.88■□□□□ 0.61
LHX1P48742 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX1P48742 AL355877.3-201ENST00000622820 899 ntBASIC18.88■□□□□ 0.61
LHX1P48742 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LHX1P48742 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LHX1P48742 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.88■□□□□ 0.61
LHX1P48742 AP005117.1-201ENST00000584346 1413 ntBASIC18.88■□□□□ 0.61
LHX1P48742 BX276092.7-203ENST00000637198 1536 ntBASIC18.88■□□□□ 0.61
LHX1P48742 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LHX1P48742 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 AC009949.1-201ENST00000623048 1830 ntBASIC18.88■□□□□ 0.61
LHX1P48742 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX1P48742 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX1P48742 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms