Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 HCG11-201ENST00000411553 5696 ntBASIC18.82■□□□□ 0.6
RTN3O95197 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
RTN3O95197 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.82■□□□□ 0.6
RTN3O95197 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.82■□□□□ 0.6
RTN3O95197 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.82■□□□□ 0.6
RTN3O95197 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.82■□□□□ 0.6
RTN3O95197 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.82■□□□□ 0.6
RTN3O95197 MIR5100-201ENST00000579544 119 ntBASIC18.82■□□□□ 0.6
RTN3O95197 AL591684.3-201ENST00000605187 298 ntBASIC18.82■□□□□ 0.6
RTN3O95197 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 TP73-AS1-210ENST00000637775 1455 ntBASIC18.82■□□□□ 0.6
RTN3O95197 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.82■□□□□ 0.6
RTN3O95197 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.82■□□□□ 0.6
RTN3O95197 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 AC090164.3-201ENST00000610780 2143 ntBASIC18.82■□□□□ 0.6
RTN3O95197 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
RTN3O95197 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RTN3O95197 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 AC018470.1-201ENST00000624790 3129 ntBASIC18.81■□□□□ 0.6
RTN3O95197 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RTN3O95197 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.81■□□□□ 0.6
RTN3O95197 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.81■□□□□ 0.6
RTN3O95197 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.81■□□□□ 0.6
RTN3O95197 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.81■□□□□ 0.6
RTN3O95197 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RTN3O95197 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.81■□□□□ 0.6
RTN3O95197 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTN3O95197 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RTN3O95197 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
RTN3O95197 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.81■□□□□ 0.6
RTN3O95197 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RTN3O95197 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.8■□□□□ 0.6
RTN3O95197 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
RTN3O95197 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.8■□□□□ 0.6
RTN3O95197 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.8■□□□□ 0.6
RTN3O95197 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.8■□□□□ 0.6
RTN3O95197 EMBP1-201ENST00000458200 901 ntBASIC18.8■□□□□ 0.6
RTN3O95197 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.8■□□□□ 0.6
RTN3O95197 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RTN3O95197 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RTN3O95197 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RTN3O95197 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
RTN3O95197 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTN3O95197 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms