Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CACNA1FO60840 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CACNA1FO60840 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC22.39■■□□□ 1.17
CACNA1FO60840 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC22.39■■□□□ 1.17
CACNA1FO60840 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CACNA1FO60840 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
CACNA1FO60840 PPIE-208ENST00000470213 927 ntTSL 3 BASIC22.39■■□□□ 1.17
CACNA1FO60840 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CACNA1FO60840 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.39■■□□□ 1.17
CACNA1FO60840 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
CACNA1FO60840 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC22.39■■□□□ 1.17
CACNA1FO60840 CD276-201ENST00000318424 2738 ntTSL 5 BASIC22.39■■□□□ 1.17
CACNA1FO60840 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC22.39■■□□□ 1.17
CACNA1FO60840 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
CACNA1FO60840 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
CACNA1FO60840 RAB17-203ENST00000409576 466 ntTSL 3 BASIC22.38■■□□□ 1.17
CACNA1FO60840 FAM197Y8-203ENST00000450145 560 ntBASIC22.38■■□□□ 1.17
CACNA1FO60840 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC22.38■■□□□ 1.17
CACNA1FO60840 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 AC021087.4-201ENST00000563761 564 ntBASIC22.38■■□□□ 1.17
CACNA1FO60840 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC22.38■■□□□ 1.17
CACNA1FO60840 AC008735.5-201ENST00000623544 497 ntBASIC22.38■■□□□ 1.17
CACNA1FO60840 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC22.38■■□□□ 1.17
CACNA1FO60840 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.38■■□□□ 1.17
CACNA1FO60840 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
CACNA1FO60840 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC22.38■■□□□ 1.17
CACNA1FO60840 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1FO60840 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC22.38■■□□□ 1.17
CACNA1FO60840 TMED1-207ENST00000591695 809 ntTSL 5 BASIC22.38■■□□□ 1.17
CACNA1FO60840 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC22.37■■□□□ 1.17
CACNA1FO60840 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC22.37■■□□□ 1.17
CACNA1FO60840 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC22.37■■□□□ 1.17
CACNA1FO60840 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
CACNA1FO60840 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC22.37■■□□□ 1.17
CACNA1FO60840 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC22.37■■□□□ 1.17
CACNA1FO60840 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC22.37■■□□□ 1.17
CACNA1FO60840 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC22.37■■□□□ 1.17
CACNA1FO60840 AC120114.3-201ENST00000611923 658 ntBASIC22.37■■□□□ 1.17
CACNA1FO60840 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC22.37■■□□□ 1.17
CACNA1FO60840 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
CACNA1FO60840 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC22.37■■□□□ 1.17
CACNA1FO60840 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC22.37■■□□□ 1.17
CACNA1FO60840 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC22.37■■□□□ 1.17
CACNA1FO60840 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1FO60840 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
CACNA1FO60840 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC22.36■■□□□ 1.17
CACNA1FO60840 SLC25A1P3-201ENST00000395415 828 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 AC009078.2-202ENST00000463353 338 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC22.36■■□□□ 1.17
CACNA1FO60840 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 AC073592.5-201ENST00000624854 528 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC22.36■■□□□ 1.17
CACNA1FO60840 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC22.36■■□□□ 1.17
CACNA1FO60840 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 AL355312.1-201ENST00000407115 2176 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
CACNA1FO60840 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC22.36■■□□□ 1.17
CACNA1FO60840 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
CACNA1FO60840 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC22.36■■□□□ 1.17
CACNA1FO60840 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 IGHV3-52-201ENST00000519770 353 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 IGHV3-22-201ENST00000520721 359 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 OR7E14P-202ENST00000530490 1290 ntBASIC22.36■■□□□ 1.17
CACNA1FO60840 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1FO60840 CIPC-205ENST00000555437 566 ntTSL 3 BASIC22.36■■□□□ 1.17
CACNA1FO60840 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC22.36■■□□□ 1.17
CACNA1FO60840 RNF151-202ENST00000569210 853 ntTSL 2 BASIC22.36■■□□□ 1.17
CACNA1FO60840 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms