Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 TSFM-210ENST00000550559 897 ntTSL 5 BASIC30.34■■■□□ 2.45
CUX2O14529 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC30.34■■■□□ 2.45
CUX2O14529 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC30.34■■■□□ 2.45
CUX2O14529 AC068587.10-201ENST00000641210 219 ntBASIC30.34■■■□□ 2.45
CUX2O14529 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX2O14529 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
CUX2O14529 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CUX2O14529 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX2O14529 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC30.34■■■□□ 2.45
CUX2O14529 AC092919.2-201ENST00000623631 1645 ntBASIC30.34■■■□□ 2.45
CUX2O14529 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX2O14529 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CUX2O14529 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC30.33■■■□□ 2.45
CUX2O14529 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
CUX2O14529 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC30.33■■■□□ 2.45
CUX2O14529 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC30.33■■■□□ 2.45
CUX2O14529 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC30.33■■■□□ 2.45
CUX2O14529 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 RPL28-209ENST00000560055 670 ntTSL 3 BASIC30.33■■■□□ 2.45
CUX2O14529 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC30.33■■■□□ 2.45
CUX2O14529 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC30.33■■■□□ 2.45
CUX2O14529 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 SDHAP2-201ENST00000455183 2001 ntBASIC30.33■■■□□ 2.45
CUX2O14529 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
CUX2O14529 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
CUX2O14529 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
CUX2O14529 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC30.33■■■□□ 2.45
CUX2O14529 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CUX2O14529 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 ACA64.2-201ENST00000459014 129 ntBASIC30.32■■■□□ 2.44
CUX2O14529 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC30.32■■■□□ 2.44
CUX2O14529 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC30.32■■■□□ 2.44
CUX2O14529 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC30.32■■■□□ 2.44
CUX2O14529 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
CUX2O14529 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC30.32■■■□□ 2.44
CUX2O14529 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CUX2O14529 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX2O14529 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 AC122714.2-201ENST00000502787 707 ntBASIC30.31■■■□□ 2.44
CUX2O14529 AC112698.1-201ENST00000510299 916 ntBASIC30.31■■■□□ 2.44
CUX2O14529 KRT8P48-201ENST00000515599 1220 ntBASIC30.31■■■□□ 2.44
CUX2O14529 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC30.31■■■□□ 2.44
CUX2O14529 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC30.31■■■□□ 2.44
CUX2O14529 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
CUX2O14529 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX2O14529 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
CUX2O14529 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC30.31■■■□□ 2.44
CUX2O14529 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
CUX2O14529 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC30.31■■■□□ 2.44
CUX2O14529 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC30.31■■■□□ 2.44
CUX2O14529 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX2O14529 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC30.31■■■□□ 2.44
CUX2O14529 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX2O14529 MIR6805-201ENST00000615055 62 ntBASIC30.31■■■□□ 2.44
CUX2O14529 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX2O14529 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
CUX2O14529 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC30.3■■■□□ 2.44
CUX2O14529 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX2O14529 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC30.3■■■□□ 2.44
CUX2O14529 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC30.3■■■□□ 2.44
CUX2O14529 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC30.3■■■□□ 2.44
CUX2O14529 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX2O14529 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX2O14529 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
CUX2O14529 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC30.3■■■□□ 2.44
CUX2O14529 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX2O14529 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX2O14529 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX2O14529 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX2O14529 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX2O14529 AC004890.2-204ENST00000481968 304 ntBASIC30.29■■■□□ 2.44
CUX2O14529 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX2O14529 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX2O14529 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX2O14529 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CUX2O14529 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms