Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 GNAS-203ENST00000306120 1878 ntBASIC17.36■□□□□ 0.37
VPS4AQ9UN37 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 FDX1P1-201ENST00000449115 551 ntBASIC17.36■□□□□ 0.37
VPS4AQ9UN37 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 NEK4P2-201ENST00000580004 1012 ntBASIC17.36■□□□□ 0.37
VPS4AQ9UN37 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4AQ9UN37 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 AC106820.2-201ENST00000563775 3264 ntBASIC17.35■□□□□ 0.37
VPS4AQ9UN37 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 FAAHP1-202ENST00000446499 1238 ntBASIC17.35■□□□□ 0.37
VPS4AQ9UN37 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.35■□□□□ 0.37
VPS4AQ9UN37 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS4AQ9UN37 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 AL096828.2-201ENST00000567259 1965 ntBASIC17.34■□□□□ 0.37
VPS4AQ9UN37 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS4AQ9UN37 CR769767.2-201ENST00000622735 460 ntBASIC17.34■□□□□ 0.37
VPS4AQ9UN37 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms