Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC090616.6-201ENST00000582640 721 ntBASIC17.84■□□□□ 0.45
MSH3P20585 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 AC069148.1-201ENST00000608741 768 ntBASIC17.84■□□□□ 0.45
MSH3P20585 AC009154.2-201ENST00000621177 724 ntBASIC17.84■□□□□ 0.45
MSH3P20585 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH3P20585 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH3P20585 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH3P20585 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
MSH3P20585 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
MSH3P20585 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.83■□□□□ 0.45
MSH3P20585 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSH3P20585 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSH3P20585 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSH3P20585 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
MSH3P20585 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
MSH3P20585 CHCHD2P8-201ENST00000429873 447 ntBASIC17.83■□□□□ 0.44
MSH3P20585 TSSC2-201ENST00000450217 709 ntBASIC17.83■□□□□ 0.44
MSH3P20585 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH3P20585 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
MSH3P20585 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH3P20585 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH3P20585 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH3P20585 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH3P20585 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH3P20585 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
MSH3P20585 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.83■□□□□ 0.44
MSH3P20585 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH3P20585 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
MSH3P20585 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH3P20585 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 AC016734.2-201ENST00000624325 1377 ntBASIC17.82■□□□□ 0.44
MSH3P20585 AC138028.4-201ENST00000564984 1845 ntBASIC17.82■□□□□ 0.44
MSH3P20585 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH3P20585 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 UPK3BP1-201ENST00000428678 509 ntBASIC17.82■□□□□ 0.44
MSH3P20585 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 DUTP2-201ENST00000519164 463 ntBASIC17.82■□□□□ 0.44
MSH3P20585 AC093458.2-201ENST00000623150 629 ntBASIC17.82■□□□□ 0.44
MSH3P20585 AC124864.1-201ENST00000623408 392 ntBASIC17.82■□□□□ 0.44
MSH3P20585 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH3P20585 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH3P20585 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH3P20585 FLJ13224-201ENST00000313737 1514 ntBASIC17.82■□□□□ 0.44
MSH3P20585 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH3P20585 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
MSH3P20585 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.81■□□□□ 0.44
MSH3P20585 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms