Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 AC005225.4-201ENST00000557330 545 ntBASIC12.4□□□□□ -0.42
CSMD3Q7Z407 MED29-202ENST00000594368 1471 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CSMD3Q7Z407 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.43
CSMD3Q7Z407 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 SLC25A24-204ENST00000569674 2357 ntBASIC12.39□□□□□ -0.43
CSMD3Q7Z407 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 AC105339.1-204ENST00000636249 355 ntBASIC12.39□□□□□ -0.43
CSMD3Q7Z407 AL022326.1-202ENST00000641533 845 ntBASIC12.39□□□□□ -0.43
CSMD3Q7Z407 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC12.39□□□□□ -0.43
CSMD3Q7Z407 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 MRPL20P1-201ENST00000400819 433 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 IGHV3-65-201ENST00000523210 341 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC093520.2-201ENST00000561830 333 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 ESPNP-201ENST00000270691 2015 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC005034.1-201ENST00000426657 489 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC093214.1-201ENST00000511688 1107 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 ELK2BP-201ENST00000415014 1224 ntBASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
CSMD3Q7Z407 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC12.37□□□□□ -0.43
CSMD3Q7Z407 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CSMD3Q7Z407 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CSMD3Q7Z407 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CSMD3Q7Z407 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CSMD3Q7Z407 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.37□□□□□ -0.43
CSMD3Q7Z407 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms