Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DDX43P3-201ENST00000441064 443 ntBASIC20.18■□□□□ 0.82
CIITAP33076 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.18■□□□□ 0.82
CIITAP33076 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.18■□□□□ 0.82
CIITAP33076 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.18■□□□□ 0.82
CIITAP33076 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CIITAP33076 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.18■□□□□ 0.82
CIITAP33076 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CIITAP33076 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.18■□□□□ 0.82
CIITAP33076 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CIITAP33076 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CIITAP33076 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.18■□□□□ 0.82
CIITAP33076 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
CIITAP33076 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.17■□□□□ 0.82
CIITAP33076 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.17■□□□□ 0.82
CIITAP33076 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 NUS1P2-201ENST00000417358 873 ntBASIC20.17■□□□□ 0.82
CIITAP33076 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.17■□□□□ 0.82
CIITAP33076 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.17■□□□□ 0.82
CIITAP33076 AC116407.2-201ENST00000613639 860 ntBASIC20.17■□□□□ 0.82
CIITAP33076 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CIITAP33076 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
CIITAP33076 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.17■□□□□ 0.82
CIITAP33076 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.17■□□□□ 0.82
CIITAP33076 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CIITAP33076 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.17■□□□□ 0.82
CIITAP33076 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.16■□□□□ 0.82
CIITAP33076 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.16■□□□□ 0.82
CIITAP33076 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.16■□□□□ 0.82
CIITAP33076 AC122714.2-201ENST00000502787 707 ntBASIC20.16■□□□□ 0.82
CIITAP33076 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.16■□□□□ 0.82
CIITAP33076 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.16■□□□□ 0.82
CIITAP33076 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.16■□□□□ 0.82
CIITAP33076 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CIITAP33076 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.16■□□□□ 0.82
CIITAP33076 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CIITAP33076 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CIITAP33076 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.16■□□□□ 0.82
CIITAP33076 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CIITAP33076 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.15■□□□□ 0.82
CIITAP33076 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.15■□□□□ 0.82
CIITAP33076 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.15■□□□□ 0.82
CIITAP33076 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 FAM220CP-201ENST00000395253 831 ntBASIC20.15■□□□□ 0.82
CIITAP33076 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.15■□□□□ 0.82
CIITAP33076 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 AL591684.3-201ENST00000605187 298 ntBASIC20.15■□□□□ 0.82
CIITAP33076 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CIITAP33076 AC009949.1-201ENST00000623048 1830 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms