Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC022211.2-201ENST00000585075 2527 ntBASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 ECEL1P2-202ENST00000465689 757 ntBASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 AD000864.1-201ENST00000624076 2295 ntBASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMA1Q9UHB6 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 AC116407.2-201ENST00000613639 860 ntBASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMA1Q9UHB6 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMA1Q9UHB6 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMA1Q9UHB6 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms