Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 MTDHP3-201ENST00000594186 672 ntBASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 AP005117.1-201ENST00000584346 1413 ntBASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 AC100803.2-201ENST00000562459 1963 ntBASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 AP000997.3-201ENST00000623333 2250 ntBASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 FAM197Y8-203ENST00000450145 560 ntBASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 FGFR3P6-201ENST00000457012 610 ntBASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMIM28A0A1B0GU29 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 AL662844.1-201ENST00000546340 181 ntBASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.2■□□□□ 0.66
SMIM28A0A1B0GU29 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMIM28A0A1B0GU29 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms