Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 RNF152P1-201ENST00000397754 604 ntBASIC18.6■□□□□ 0.57
PCDH9Q9HC56 TSPY5P-201ENST00000426936 936 ntBASIC18.6■□□□□ 0.57
PCDH9Q9HC56 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 FAM210CP-201ENST00000445714 574 ntBASIC18.6■□□□□ 0.57
PCDH9Q9HC56 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 AL645608.8-201ENST00000606034 2086 ntBASIC18.6■□□□□ 0.57
PCDH9Q9HC56 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 AC034232.1-201ENST00000506026 1064 ntBASIC18.59■□□□□ 0.57
PCDH9Q9HC56 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH9Q9HC56 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
PCDH9Q9HC56 AC132938.6-201ENST00000623828 1655 ntBASIC18.58■□□□□ 0.57
PCDH9Q9HC56 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 AL157888.1-201ENST00000631930 593 ntBASIC18.58■□□□□ 0.56
PCDH9Q9HC56 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDH9Q9HC56 AC139713.2-201ENST00000641328 2723 ntBASIC18.58■□□□□ 0.56
PCDH9Q9HC56 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms