Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KRT18P48-201ENST00000434763 852 ntBASIC19.34■□□□□ 0.69
SIX2Q9NPC8 SPDYE13P-201ENST00000445314 798 ntBASIC19.34■□□□□ 0.69
SIX2Q9NPC8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 LINC01023-201ENST00000606054 436 ntBASIC19.34■□□□□ 0.69
SIX2Q9NPC8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX2Q9NPC8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX2Q9NPC8 IGHGP-201ENST00000390555 1178 ntBASIC19.33■□□□□ 0.68
SIX2Q9NPC8 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 AK4P3-201ENST00000418260 669 ntBASIC19.33■□□□□ 0.68
SIX2Q9NPC8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 VENTXP5-201ENST00000523979 775 ntBASIC19.33■□□□□ 0.68
SIX2Q9NPC8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SIX2Q9NPC8 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC112907.2-201ENST00000448639 330 ntBASIC19.32■□□□□ 0.68
SIX2Q9NPC8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 LINC00304-203ENST00000565008 1864 ntBASIC19.32■□□□□ 0.68
SIX2Q9NPC8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX2Q9NPC8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 REXO1L11P-201ENST00000620964 1927 ntBASIC19.31■□□□□ 0.68
SIX2Q9NPC8 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.31■□□□□ 0.68
SIX2Q9NPC8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 HOMER2P1-201ENST00000455653 964 ntBASIC19.31■□□□□ 0.68
SIX2Q9NPC8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.31■□□□□ 0.68
SIX2Q9NPC8 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.31■□□□□ 0.68
SIX2Q9NPC8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX2Q9NPC8 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms