Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
COL4A4P53420 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC009102.3-201ENST00000623118 1491 ntBASIC19.17■□□□□ 0.66
COL4A4P53420 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC018845.2-201ENST00000568326 409 ntBASIC19.17■□□□□ 0.66
COL4A4P53420 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A4P53420 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A4P53420 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A4P53420 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A4P53420 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
COL4A4P53420 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A4P53420 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 ELK2BP-201ENST00000415014 1224 ntBASIC19.16■□□□□ 0.66
COL4A4P53420 FAM8A3P-201ENST00000427218 844 ntBASIC19.16■□□□□ 0.66
COL4A4P53420 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.16■□□□□ 0.66
COL4A4P53420 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.16■□□□□ 0.66
COL4A4P53420 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A4P53420 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A4P53420 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 AL078644.1-201ENST00000609881 752 ntBASIC19.16■□□□□ 0.66
COL4A4P53420 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.16■□□□□ 0.66
COL4A4P53420 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A4P53420 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A4P53420 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A4P53420 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 AC005082.1-201ENST00000413042 2259 ntBASIC19.15■□□□□ 0.66
COL4A4P53420 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A4P53420 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A4P53420 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A4P53420 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A4P53420 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.15■□□□□ 0.66
COL4A4P53420 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 AC097374.2-201ENST00000618617 1306 ntBASIC19.15■□□□□ 0.66
COL4A4P53420 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A4P53420 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A4P53420 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A4P53420 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A4P53420 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.14■□□□□ 0.66
COL4A4P53420 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.14■□□□□ 0.66
COL4A4P53420 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.14■□□□□ 0.66
COL4A4P53420 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.14■□□□□ 0.66
COL4A4P53420 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A4P53420 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL4A4P53420 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL4A4P53420 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
COL4A4P53420 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
COL4A4P53420 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A4P53420 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A4P53420 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A4P53420 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A4P53420 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
COL4A4P53420 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A4P53420 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A4P53420 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A4P53420 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A4P53420 AC108073.2-201ENST00000464002 357 ntBASIC19.14■□□□□ 0.65
COL4A4P53420 BX005266.1-201ENST00000473402 457 ntBASIC19.14■□□□□ 0.65
COL4A4P53420 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A4P53420 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.14■□□□□ 0.65
COL4A4P53420 AC008687.5-201ENST00000593746 558 ntBASIC19.14■□□□□ 0.65
COL4A4P53420 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A4P53420 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A4P53420 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.14■□□□□ 0.65
COL4A4P53420 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms