Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.9■□□□□ 0.62
APOEP02649 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
APOEP02649 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 Z83836.1-201ENST00000624605 1642 ntBASIC18.9■□□□□ 0.62
APOEP02649 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
APOEP02649 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
APOEP02649 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
APOEP02649 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.9■□□□□ 0.62
APOEP02649 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.9■□□□□ 0.62
APOEP02649 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 RNF126P1-202ENST00000569893 925 ntBASIC18.9■□□□□ 0.62
APOEP02649 AC005332.3-201ENST00000589904 676 ntBASIC18.9■□□□□ 0.62
APOEP02649 AC069148.1-201ENST00000608741 768 ntBASIC18.9■□□□□ 0.62
APOEP02649 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
APOEP02649 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.9■□□□□ 0.62
APOEP02649 AC068880.1-201ENST00000507289 2297 ntBASIC18.9■□□□□ 0.62
APOEP02649 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
APOEP02649 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
APOEP02649 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
APOEP02649 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
APOEP02649 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
APOEP02649 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
APOEP02649 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.89■□□□□ 0.62
APOEP02649 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
APOEP02649 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.62
APOEP02649 LINC01126-201ENST00000623515 1646 ntBASIC18.89■□□□□ 0.62
APOEP02649 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
APOEP02649 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.89■□□□□ 0.61
APOEP02649 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 TSPY22P-201ENST00000427496 604 ntBASIC18.89■□□□□ 0.61
APOEP02649 BX276092.5-203ENST00000456199 560 ntBASIC18.89■□□□□ 0.61
APOEP02649 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.89■□□□□ 0.61
APOEP02649 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 AC113404.2-201ENST00000507884 177 ntBASIC18.89■□□□□ 0.61
APOEP02649 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.89■□□□□ 0.61
APOEP02649 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.89■□□□□ 0.61
APOEP02649 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.89■□□□□ 0.61
APOEP02649 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
APOEP02649 AL390719.2-201ENST00000606993 987 ntBASIC18.89■□□□□ 0.61
APOEP02649 AL121672.3-201ENST00000608644 468 ntBASIC18.89■□□□□ 0.61
APOEP02649 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.89■□□□□ 0.61
APOEP02649 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
APOEP02649 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.89■□□□□ 0.61
APOEP02649 ESPNP-201ENST00000270691 2015 ntBASIC18.89■□□□□ 0.61
APOEP02649 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
APOEP02649 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.89■□□□□ 0.61
APOEP02649 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
APOEP02649 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.89■□□□□ 0.61
APOEP02649 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
APOEP02649 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 KRT8P26-201ENST00000534154 1276 ntBASIC18.88■□□□□ 0.61
APOEP02649 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.88■□□□□ 0.61
APOEP02649 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.88■□□□□ 0.61
APOEP02649 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
APOEP02649 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
APOEP02649 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.88■□□□□ 0.61
APOEP02649 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
APOEP02649 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms