Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 NUS1P2-201ENST00000417358 873 ntBASIC19.04■□□□□ 0.64
CDH9Q9ULB4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 UNC93B7-201ENST00000509439 705 ntBASIC19.04■□□□□ 0.64
CDH9Q9ULB4 AC096582.2-201ENST00000510860 516 ntBASIC19.04■□□□□ 0.64
CDH9Q9ULB4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 LINC01711-201ENST00000598340 967 ntBASIC19.04■□□□□ 0.64
CDH9Q9ULB4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 IFNL4P1-201ENST00000607083 540 ntBASIC19.04■□□□□ 0.64
CDH9Q9ULB4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 AC104581.1-202ENST00000635932 2618 ntBASIC19.04■□□□□ 0.64
CDH9Q9ULB4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CDH9Q9ULB4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 AC114341.1-201ENST00000618070 349 ntBASIC19.03■□□□□ 0.64
CDH9Q9ULB4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 TP73-AS1-210ENST00000637775 1455 ntBASIC19.03■□□□□ 0.64
CDH9Q9ULB4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH9Q9ULB4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 TPM4P1-201ENST00000436100 807 ntBASIC19.02■□□□□ 0.64
CDH9Q9ULB4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.02■□□□□ 0.64
CDH9Q9ULB4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CDH9Q9ULB4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.02■□□□□ 0.63
CDH9Q9ULB4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDH9Q9ULB4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDH9Q9ULB4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDH9Q9ULB4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDH9Q9ULB4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDH9Q9ULB4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.01■□□□□ 0.63
CDH9Q9ULB4 AC097374.2-201ENST00000618617 1306 ntBASIC19.01■□□□□ 0.63
CDH9Q9ULB4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.01■□□□□ 0.63
CDH9Q9ULB4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms