Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC40Q4G0X9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 AC145285.6-201ENST00000604632 637 ntBASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 AC141257.4-201ENST00000634557 245 ntBASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 AC136944.6-201ENST00000634818 245 ntBASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC40Q4G0X9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC40Q4G0X9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC40Q4G0X9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC40Q4G0X9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC40Q4G0X9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 AL157888.1-201ENST00000631930 593 ntBASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC40Q4G0X9 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms