Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TPM4P67936 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 MIR6786-201ENST00000616843 113 ntBASIC20.26■□□□□ 0.83
TPM4P67936 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
TPM4P67936 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 AC093010.1-201ENST00000473625 1624 ntBASIC20.26■□□□□ 0.83
TPM4P67936 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TPM4P67936 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 GPAT2P1-201ENST00000444924 1672 ntBASIC20.26■□□□□ 0.83
TPM4P67936 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.25■□□□□ 0.83
TPM4P67936 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TPM4P67936 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TPM4P67936 AC141586.5-201ENST00000624546 2050 ntBASIC20.25■□□□□ 0.83
TPM4P67936 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.25■□□□□ 0.83
TPM4P67936 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.25■□□□□ 0.83
TPM4P67936 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.25■□□□□ 0.83
TPM4P67936 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.25■□□□□ 0.83
TPM4P67936 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.25■□□□□ 0.83
TPM4P67936 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
TPM4P67936 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.25■□□□□ 0.83
TPM4P67936 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.25■□□□□ 0.83
TPM4P67936 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 SDHAP2-201ENST00000455183 2001 ntBASIC20.25■□□□□ 0.83
TPM4P67936 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.25■□□□□ 0.83
TPM4P67936 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
TPM4P67936 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TPM4P67936 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TPM4P67936 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TPM4P67936 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.24■□□□□ 0.83
TPM4P67936 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 PKD1P5-201ENST00000532415 10291 ntBASIC20.24■□□□□ 0.83
TPM4P67936 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.24■□□□□ 0.83
TPM4P67936 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
TPM4P67936 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.24■□□□□ 0.83
TPM4P67936 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TPM4P67936 RN7SL471P-201ENST00000580476 299 ntBASIC20.24■□□□□ 0.83
TPM4P67936 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.24■□□□□ 0.83
TPM4P67936 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TPM4P67936 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TPM4P67936 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.24■□□□□ 0.83
TPM4P67936 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.24■□□□□ 0.83
TPM4P67936 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.24■□□□□ 0.83
TPM4P67936 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TPM4P67936 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
TPM4P67936 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TPM4P67936 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
TPM4P67936 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TPM4P67936 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.23■□□□□ 0.83
TPM4P67936 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 B3GAT3P1-201ENST00000471720 806 ntBASIC20.23■□□□□ 0.83
TPM4P67936 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms