Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.68■□□□□ 0.9
SMARCA1P28370 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.68■□□□□ 0.9
SMARCA1P28370 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.68■□□□□ 0.9
SMARCA1P28370 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.68■□□□□ 0.9
SMARCA1P28370 BNIP3P18-201ENST00000593976 575 ntBASIC20.68■□□□□ 0.9
SMARCA1P28370 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCA1P28370 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCA1P28370 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SMARCA1P28370 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SMARCA1P28370 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCA1P28370 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
SMARCA1P28370 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SMARCA1P28370 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCA1P28370 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 TSPY19P-201ENST00000418461 509 ntBASIC20.67■□□□□ 0.9
SMARCA1P28370 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCA1P28370 TSPY18P-201ENST00000441642 509 ntBASIC20.67■□□□□ 0.9
SMARCA1P28370 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCA1P28370 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCA1P28370 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCA1P28370 AC011467.2-201ENST00000598425 242 ntBASIC20.67■□□□□ 0.9
SMARCA1P28370 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCA1P28370 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCA1P28370 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCA1P28370 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCA1P28370 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCA1P28370 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCA1P28370 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCA1P28370 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
SMARCA1P28370 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.66■□□□□ 0.9
SMARCA1P28370 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SMARCA1P28370 DDX43P3-201ENST00000441064 443 ntBASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms