Protein–RNA interactions for Protein: A1L190

SYCE3, Synaptonemal complex central element protein 3, humanhuman

Predictions only

Length 88 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYCE3A1L190 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.59■□□□□ 0.89
SYCE3A1L190 AC106886.4-201ENST00000623557 2502 ntBASIC20.59■□□□□ 0.89
SYCE3A1L190 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYCE3A1L190 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SYCE3A1L190 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SYCE3A1L190 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SYCE3A1L190 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYCE3A1L190 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SYCE3A1L190 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.59■□□□□ 0.89
SYCE3A1L190 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.59■□□□□ 0.89
SYCE3A1L190 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.58■□□□□ 0.89
SYCE3A1L190 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
SYCE3A1L190 AL163051.1-201ENST00000569214 1512 ntBASIC20.58■□□□□ 0.89
SYCE3A1L190 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
SYCE3A1L190 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.58■□□□□ 0.89
SYCE3A1L190 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 GPAT2P1-201ENST00000444924 1672 ntBASIC20.58■□□□□ 0.89
SYCE3A1L190 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SYCE3A1L190 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SYCE3A1L190 UNC93B5-201ENST00000530315 699 ntBASIC20.58■□□□□ 0.89
SYCE3A1L190 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.58■□□□□ 0.89
SYCE3A1L190 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SYCE3A1L190 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.58■□□□□ 0.89
SYCE3A1L190 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.58■□□□□ 0.89
SYCE3A1L190 AC069544.1-201ENST00000609399 999 ntBASIC20.58■□□□□ 0.89
SYCE3A1L190 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.58■□□□□ 0.89
SYCE3A1L190 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SYCE3A1L190 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.58■□□□□ 0.89
SYCE3A1L190 AL023875.1-201ENST00000640777 796 ntBASIC20.58■□□□□ 0.89
SYCE3A1L190 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SYCE3A1L190 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
SYCE3A1L190 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.58■□□□□ 0.88
SYCE3A1L190 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SYCE3A1L190 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYCE3A1L190 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 AC100803.2-201ENST00000562459 1963 ntBASIC20.57■□□□□ 0.88
SYCE3A1L190 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SYCE3A1L190 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
SYCE3A1L190 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.57■□□□□ 0.88
SYCE3A1L190 KRASP1-201ENST00000407852 552 ntBASIC20.57■□□□□ 0.88
SYCE3A1L190 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.57■□□□□ 0.88
SYCE3A1L190 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.57■□□□□ 0.88
SYCE3A1L190 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SYCE3A1L190 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.57■□□□□ 0.88
SYCE3A1L190 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.57■□□□□ 0.88
SYCE3A1L190 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
SYCE3A1L190 AC011298.2-201ENST00000617989 482 ntBASIC20.57■□□□□ 0.88
SYCE3A1L190 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
SYCE3A1L190 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
SYCE3A1L190 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SYCE3A1L190 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYCE3A1L190 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC20.57■□□□□ 0.88
SYCE3A1L190 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.56■□□□□ 0.88
SYCE3A1L190 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.56■□□□□ 0.88
SYCE3A1L190 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.56■□□□□ 0.88
SYCE3A1L190 MCCD1P1-208ENST00000445732 328 ntBASIC20.56■□□□□ 0.88
SYCE3A1L190 RPS2P4-201ENST00000476944 856 ntBASIC20.56■□□□□ 0.88
SYCE3A1L190 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.56■□□□□ 0.88
SYCE3A1L190 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SYCE3A1L190 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC20.56■□□□□ 0.88
SYCE3A1L190 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SYCE3A1L190 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYCE3A1L190 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.56■□□□□ 0.88
SYCE3A1L190 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYCE3A1L190 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms