Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
MMP28Q9H239 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
MMP28Q9H239 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
MMP28Q9H239 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
MMP28Q9H239 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
MMP28Q9H239 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC15.99■□□□□ 0.15
MMP28Q9H239 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 YBX1P10-201ENST00000444752 975 ntBASIC15.99■□□□□ 0.15
MMP28Q9H239 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.99■□□□□ 0.15
MMP28Q9H239 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.99■□□□□ 0.15
MMP28Q9H239 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
MMP28Q9H239 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
MMP28Q9H239 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
MMP28Q9H239 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.98■□□□□ 0.15
MMP28Q9H239 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
MMP28Q9H239 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
MMP28Q9H239 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.98■□□□□ 0.15
MMP28Q9H239 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.98■□□□□ 0.15
MMP28Q9H239 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.98■□□□□ 0.15
MMP28Q9H239 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC15.98■□□□□ 0.15
MMP28Q9H239 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.98■□□□□ 0.15
MMP28Q9H239 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
MMP28Q9H239 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.98■□□□□ 0.15
MMP28Q9H239 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MMP28Q9H239 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
MMP28Q9H239 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MMP28Q9H239 LINC00554-201ENST00000564841 3011 ntBASIC15.97■□□□□ 0.15
MMP28Q9H239 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MMP28Q9H239 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
MMP28Q9H239 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.97■□□□□ 0.15
MMP28Q9H239 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms