Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 AC104581.4-201ENST00000623126 3052 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AC241377.3-202ENST00000626088 1088 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AC241585.3-202ENST00000628937 1088 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AC245100.8-202ENST00000629247 1058 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AC008556.1-201ENST00000610908 2040 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 OR2I1P-209ENST00000641730 5365 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AC144831.1-201ENST00000573312 2656 ntBASIC11.29□□□□□ -0.6
LINC00643Q86TS7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC11.29□□□□□ -0.6
LINC00643Q86TS7 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 AC022413.1-201ENST00000624602 984 ntBASIC11.28□□□□□ -0.6
LINC00643Q86TS7 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
LINC00643Q86TS7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms