Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.38■□□□□ 0.69
VCPP55072 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VCPP55072 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.37■□□□□ 0.69
VCPP55072 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 LETM1P2-201ENST00000597330 2178 ntBASIC19.37■□□□□ 0.69
VCPP55072 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 AC008556.1-201ENST00000610908 2040 ntBASIC19.37■□□□□ 0.69
VCPP55072 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VCPP55072 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.37■□□□□ 0.69
VCPP55072 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
VCPP55072 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
VCPP55072 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.37■□□□□ 0.69
VCPP55072 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.37■□□□□ 0.69
VCPP55072 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
VCPP55072 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.37■□□□□ 0.69
VCPP55072 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VCPP55072 AC138894.3-201ENST00000603787 634 ntBASIC19.37■□□□□ 0.69
VCPP55072 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.37■□□□□ 0.69
VCPP55072 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.37■□□□□ 0.69
VCPP55072 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.37■□□□□ 0.69
VCPP55072 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VCPP55072 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCPP55072 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 NOC2LP1-202ENST00000452600 2235 ntBASIC19.36■□□□□ 0.69
VCPP55072 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
VCPP55072 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
VCPP55072 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.36■□□□□ 0.69
VCPP55072 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.36■□□□□ 0.69
VCPP55072 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.36■□□□□ 0.69
VCPP55072 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCPP55072 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VCPP55072 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.36■□□□□ 0.69
VCPP55072 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VCPP55072 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.35■□□□□ 0.69
VCPP55072 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.35■□□□□ 0.69
VCPP55072 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.35■□□□□ 0.69
VCPP55072 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.35■□□□□ 0.69
VCPP55072 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.35■□□□□ 0.69
VCPP55072 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.35■□□□□ 0.69
VCPP55072 TSPY22P-201ENST00000427496 604 ntBASIC19.35■□□□□ 0.69
VCPP55072 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.35■□□□□ 0.69
VCPP55072 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.35■□□□□ 0.69
VCPP55072 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.35■□□□□ 0.69
VCPP55072 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.35■□□□□ 0.69
VCPP55072 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 AL353801.3-201ENST00000609898 542 ntBASIC19.35■□□□□ 0.69
VCPP55072 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.35■□□□□ 0.69
VCPP55072 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 ABALON-201ENST00000629058 1903 ntBASIC19.35■□□□□ 0.69
VCPP55072 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms