Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC1P18887 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC1P18887 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.06■□□□□ 0.48
XRCC1P18887 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC1P18887 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC1P18887 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.06■□□□□ 0.48
XRCC1P18887 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC1P18887 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC1P18887 LINC00896-202ENST00000609602 2128 ntBASIC18.05■□□□□ 0.48
XRCC1P18887 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
XRCC1P18887 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
XRCC1P18887 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.05■□□□□ 0.48
XRCC1P18887 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.05■□□□□ 0.48
XRCC1P18887 SPDYE13P-201ENST00000445314 798 ntBASIC18.05■□□□□ 0.48
XRCC1P18887 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 KRT18P41-201ENST00000518924 1277 ntBASIC18.05■□□□□ 0.48
XRCC1P18887 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.05■□□□□ 0.48
XRCC1P18887 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
XRCC1P18887 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.05■□□□□ 0.48
XRCC1P18887 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
XRCC1P18887 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.05■□□□□ 0.48
XRCC1P18887 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.05■□□□□ 0.48
XRCC1P18887 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.05■□□□□ 0.48
XRCC1P18887 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
XRCC1P18887 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.05■□□□□ 0.48
XRCC1P18887 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.05■□□□□ 0.48
XRCC1P18887 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.05■□□□□ 0.48
XRCC1P18887 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
XRCC1P18887 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC1P18887 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
XRCC1P18887 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
XRCC1P18887 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 UPK3BP1-201ENST00000428678 509 ntBASIC18.04■□□□□ 0.48
XRCC1P18887 HLA-F-220ENST00000434407 884 ntBASIC18.04■□□□□ 0.48
XRCC1P18887 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 AC079602.3-201ENST00000623931 403 ntBASIC18.04■□□□□ 0.48
XRCC1P18887 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC1P18887 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC1P18887 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC1P18887 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.04■□□□□ 0.48
XRCC1P18887 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC1P18887 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
XRCC1P18887 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
XRCC1P18887 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.04■□□□□ 0.48
XRCC1P18887 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
XRCC1P18887 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.03■□□□□ 0.48
XRCC1P18887 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.03■□□□□ 0.48
XRCC1P18887 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
XRCC1P18887 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.03■□□□□ 0.48
XRCC1P18887 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.03■□□□□ 0.48
XRCC1P18887 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
XRCC1P18887 AC099398.1-201ENST00000567919 2776 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms