Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.82■■□□□ 1.72
PCDHA3Q9Y5H8 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.82■■□□□ 1.72
PCDHA3Q9Y5H8 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA3Q9Y5H8 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA3Q9Y5H8 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA3Q9Y5H8 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA3Q9Y5H8 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.81■■□□□ 1.72
PCDHA3Q9Y5H8 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA3Q9Y5H8 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.81■■□□□ 1.72
PCDHA3Q9Y5H8 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.81■■□□□ 1.72
PCDHA3Q9Y5H8 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.8■■□□□ 1.72
PCDHA3Q9Y5H8 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA3Q9Y5H8 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 LINC01971-201ENST00000617888 1048 ntBASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 AC020928.2-201ENST00000588717 2197 ntBASIC25.78■■□□□ 1.72
PCDHA3Q9Y5H8 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA3Q9Y5H8 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 RPS2P35-201ENST00000443417 897 ntBASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
PCDHA3Q9Y5H8 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA3Q9Y5H8 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA3Q9Y5H8 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA3Q9Y5H8 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA3Q9Y5H8 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA3Q9Y5H8 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
PCDHA3Q9Y5H8 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
PCDHA3Q9Y5H8 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.74■■□□□ 1.71
PCDHA3Q9Y5H8 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA3Q9Y5H8 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.74■■□□□ 1.71
PCDHA3Q9Y5H8 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA3Q9Y5H8 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA3Q9Y5H8 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHA3Q9Y5H8 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHA3Q9Y5H8 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHA3Q9Y5H8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.73■■□□□ 1.71
PCDHA3Q9Y5H8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.73■■□□□ 1.71
PCDHA3Q9Y5H8 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L13-201ENST00000554103 1267 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L15-201ENST00000611059 1267 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L23-201ENST00000615195 1269 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L24-201ENST00000617576 1269 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L22-201ENST00000618238 1269 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L20-201ENST00000619712 1269 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L21-201ENST00000622058 1269 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L10-201ENST00000622460 1267 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 DUX4L25-201ENST00000624915 1269 ntBASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA3Q9Y5H8 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
PCDHA3Q9Y5H8 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA3Q9Y5H8 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA3Q9Y5H8 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA3Q9Y5H8 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA3Q9Y5H8 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
PCDHA3Q9Y5H8 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.69■■□□□ 1.7
PCDHA3Q9Y5H8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
PCDHA3Q9Y5H8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
PCDHA3Q9Y5H8 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.69■■□□□ 1.7
PCDHA3Q9Y5H8 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.69■■□□□ 1.7
PCDHA3Q9Y5H8 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.69■■□□□ 1.7
PCDHA3Q9Y5H8 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.68■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms