Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
PCDH9Q9HC56 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.56■■□□□ 1.68
PCDH9Q9HC56 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDH9Q9HC56 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
PCDH9Q9HC56 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PCDH9Q9HC56 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.56■■□□□ 1.68
PCDH9Q9HC56 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDH9Q9HC56 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.55■■□□□ 1.68
PCDH9Q9HC56 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.55■■□□□ 1.68
PCDH9Q9HC56 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDH9Q9HC56 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDH9Q9HC56 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDH9Q9HC56 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDH9Q9HC56 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDH9Q9HC56 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDH9Q9HC56 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDH9Q9HC56 AP004609.3-201ENST00000610705 1884 ntBASIC25.53■■□□□ 1.68
PCDH9Q9HC56 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDH9Q9HC56 AC016575.1-201ENST00000607026 382 ntBASIC25.52■■□□□ 1.68
PCDH9Q9HC56 AC145676.1-201ENST00000514988 2004 ntBASIC25.52■■□□□ 1.68
PCDH9Q9HC56 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
PCDH9Q9HC56 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.52■■□□□ 1.68
PCDH9Q9HC56 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.51■■□□□ 1.67
PCDH9Q9HC56 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDH9Q9HC56 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.5■■□□□ 1.67
PCDH9Q9HC56 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.5■■□□□ 1.67
PCDH9Q9HC56 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.49■■□□□ 1.67
PCDH9Q9HC56 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PCDH9Q9HC56 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
PCDH9Q9HC56 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDH9Q9HC56 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDH9Q9HC56 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.47■■□□□ 1.67
PCDH9Q9HC56 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.47■■□□□ 1.67
PCDH9Q9HC56 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDH9Q9HC56 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
PCDH9Q9HC56 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.46■■□□□ 1.67
PCDH9Q9HC56 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.46■■□□□ 1.67
PCDH9Q9HC56 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
PCDH9Q9HC56 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PCDH9Q9HC56 AC008813.1-201ENST00000536597 885 ntBASIC25.44■■□□□ 1.66
PCDH9Q9HC56 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDH9Q9HC56 WHAMMP3-201ENST00000611636 1609 ntBASIC25.44■■□□□ 1.66
PCDH9Q9HC56 AC142472.1-201ENST00000612013 1741 ntBASIC25.43■■□□□ 1.66
PCDH9Q9HC56 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH9Q9HC56 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.43■■□□□ 1.66
PCDH9Q9HC56 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH9Q9HC56 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH9Q9HC56 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDH9Q9HC56 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDH9Q9HC56 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDH9Q9HC56 AC092803.2-201ENST00000564287 1899 ntBASIC25.42■■□□□ 1.66
PCDH9Q9HC56 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PCDH9Q9HC56 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDH9Q9HC56 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDH9Q9HC56 DUSP8P4-201ENST00000399538 1761 ntBASIC25.41■■□□□ 1.66
PCDH9Q9HC56 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH9Q9HC56 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDH9Q9HC56 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDH9Q9HC56 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.39■■□□□ 1.66
PCDH9Q9HC56 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.39■■□□□ 1.65
PCDH9Q9HC56 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.38■■□□□ 1.65
PCDH9Q9HC56 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
PCDH9Q9HC56 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDH9Q9HC56 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDH9Q9HC56 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
PCDH9Q9HC56 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDH9Q9HC56 MIR639-201ENST00000384974 98 ntBASIC25.37■■□□□ 1.65
PCDH9Q9HC56 HLA-V-202ENST00000446817 847 ntBASIC25.37■■□□□ 1.65
PCDH9Q9HC56 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDH9Q9HC56 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDH9Q9HC56 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH9Q9HC56 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.36■■□□□ 1.65
PCDH9Q9HC56 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH9Q9HC56 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH9Q9HC56 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH9Q9HC56 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.35■■□□□ 1.65
PCDH9Q9HC56 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.35■■□□□ 1.65
PCDH9Q9HC56 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
PCDH9Q9HC56 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.35■■□□□ 1.65
PCDH9Q9HC56 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PCDH9Q9HC56 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDH9Q9HC56 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDH9Q9HC56 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.34■■□□□ 1.65
PCDH9Q9HC56 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.34■■□□□ 1.65
PCDH9Q9HC56 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
PCDH9Q9HC56 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDH9Q9HC56 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.33■■□□□ 1.65
PCDH9Q9HC56 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms