Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
LYSMD1Q96S90 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
LYSMD1Q96S90 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
LYSMD1Q96S90 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
LYSMD1Q96S90 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
LYSMD1Q96S90 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.81■■□□□ 1.56
LYSMD1Q96S90 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
LYSMD1Q96S90 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
LYSMD1Q96S90 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
LYSMD1Q96S90 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
LYSMD1Q96S90 AL157400.5-201ENST00000507624 621 ntBASIC24.79■■□□□ 1.56
LYSMD1Q96S90 HSD17B1P1-201ENST00000590052 955 ntBASIC24.79■■□□□ 1.56
LYSMD1Q96S90 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
LYSMD1Q96S90 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
LYSMD1Q96S90 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
LYSMD1Q96S90 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.78■■□□□ 1.56
LYSMD1Q96S90 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LYSMD1Q96S90 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LYSMD1Q96S90 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LYSMD1Q96S90 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
LYSMD1Q96S90 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
LYSMD1Q96S90 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LYSMD1Q96S90 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LYSMD1Q96S90 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.75■■□□□ 1.55
LYSMD1Q96S90 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
LYSMD1Q96S90 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.74■■□□□ 1.55
LYSMD1Q96S90 ECEL1P2-201ENST00000461596 1295 ntBASIC24.74■■□□□ 1.55
LYSMD1Q96S90 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LYSMD1Q96S90 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LYSMD1Q96S90 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.73■■□□□ 1.55
LYSMD1Q96S90 RNF126P1-201ENST00000567452 1320 ntBASIC24.73■■□□□ 1.55
LYSMD1Q96S90 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LYSMD1Q96S90 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.72■■□□□ 1.55
LYSMD1Q96S90 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
LYSMD1Q96S90 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LYSMD1Q96S90 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.71■■□□□ 1.55
LYSMD1Q96S90 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LYSMD1Q96S90 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
LYSMD1Q96S90 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
LYSMD1Q96S90 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
LYSMD1Q96S90 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LYSMD1Q96S90 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LYSMD1Q96S90 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.69■■□□□ 1.54
LYSMD1Q96S90 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.68■■□□□ 1.54
LYSMD1Q96S90 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
LYSMD1Q96S90 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
LYSMD1Q96S90 AC025884.2-201ENST00000553429 711 ntBASIC24.68■■□□□ 1.54
LYSMD1Q96S90 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
LYSMD1Q96S90 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
LYSMD1Q96S90 AL359504.2-201ENST00000605506 1601 ntBASIC24.68■■□□□ 1.54
LYSMD1Q96S90 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LYSMD1Q96S90 AC142472.1-201ENST00000612013 1741 ntBASIC24.67■■□□□ 1.54
LYSMD1Q96S90 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LYSMD1Q96S90 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.67■■□□□ 1.54
LYSMD1Q96S90 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
LYSMD1Q96S90 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
LYSMD1Q96S90 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
LYSMD1Q96S90 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LYSMD1Q96S90 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
LYSMD1Q96S90 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.65■■□□□ 1.54
LYSMD1Q96S90 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LYSMD1Q96S90 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LYSMD1Q96S90 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LYSMD1Q96S90 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LYSMD1Q96S90 RARRES2P2-201ENST00000394842 485 ntBASIC24.64■■□□□ 1.54
LYSMD1Q96S90 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.64■■□□□ 1.54
LYSMD1Q96S90 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.64■■□□□ 1.53
LYSMD1Q96S90 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
LYSMD1Q96S90 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.62■■□□□ 1.53
LYSMD1Q96S90 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.62■■□□□ 1.53
LYSMD1Q96S90 AP004609.3-201ENST00000610705 1884 ntBASIC24.62■■□□□ 1.53
LYSMD1Q96S90 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
LYSMD1Q96S90 AL121749.1-202ENST00000609313 2153 ntBASIC24.62■■□□□ 1.53
LYSMD1Q96S90 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LYSMD1Q96S90 SMPD5-203ENST00000639008 1464 ntBASIC24.62■■□□□ 1.53
LYSMD1Q96S90 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
LYSMD1Q96S90 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LYSMD1Q96S90 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
LYSMD1Q96S90 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.61■■□□□ 1.53
LYSMD1Q96S90 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.61■■□□□ 1.53
LYSMD1Q96S90 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms